View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_low_26 (Length: 221)
Name: NF18897_low_26
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 51360200 - 51360391
Alignment:
| Q |
19 |
agagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagctagcaccaattgtaatactaaacaaaaa |
118 |
Q |
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| T |
51360200 |
agagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagctagcaccaattgtaatactaaacaaaaa |
51360299 |
T |
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| Q |
119 |
ccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacctatgattc |
210 |
Q |
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| T |
51360300 |
ccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacctctgattc |
51360391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 51350938 - 51351021
Alignment:
| Q |
126 |
aagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacctatgatt |
209 |
Q |
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| T |
51350938 |
aagaagctagctagttggagacggtcctttggattcttgtcatcaaattgatcagctcctagagcaggaacacagcctttgatt |
51351021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 51350845 - 51350919
Alignment:
| Q |
18 |
aagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagcta |
92 |
Q |
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||||||||||||||||||||||||||||| | ||| || ||||||| ||||||||| ||| ||||||||||| |
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| T |
51350845 |
aagagagatataagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagcta |
51350919 |
T |
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