View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18897_low_4 (Length: 689)
Name: NF18897_low_4
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 50012109 - 50012694
Alignment:
| Q |
1 |
aaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggtaagtgtttttcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
50012109 |
aaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacatatgttcttctttctaatgtaacgtgggcaagtgttttccaaa |
50012208 |
T |
|
| Q |
101 |
tattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgttcatcc |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50012209 |
tattaaagattgatttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgttcatcc |
50012308 |
T |
|
| Q |
201 |
ttgtaatatcaacttcatctaattatgtgcattcacttcttctctcacacccacttagatttatagtttgannnnnnnnnnnatttctactgagtcacta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50012309 |
ctgtaatatcaacttcatctaattatgtgcattcacttcttctctcacacccacttagatttatagtttgatttttttttt-atttctactgagtcacta |
50012407 |
T |
|
| Q |
301 |
actcggtggtgagttaactcaacggtgtcttcttaccaagcaagaatagccactccagatgccacaaactgcctatattacgaacatctggttgctttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50012408 |
actcggtggtgagttaactcaacggtgtcttcttcccaagcaagaatagccactccagatgccacaaactgcctatattacgaacatctggttgctttta |
50012507 |
T |
|
| Q |
401 |
tttttgttgccaatatgagtcaacaatggcgaaaacttacacaatgnnnnnnntgggattttagaaaaccagtgatcaattgaattgaaaggaaaccgag |
500 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
50012508 |
tttttgttgccaatatcagtcaacaatggtgaaaacttgcacaatgaaaaaaatgggattttagaaaatcagtgatcaattgaattgaagggaaaccgag |
50012607 |
T |
|
| Q |
501 |
ttgttggaacttgaaatgaagctgtttttatgaattttctccgaccatggttgaaatctcataggaaatgaagatttgcagcactgt |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50012608 |
ttgttggaacttgaaatgaagctgtttttatgaattttctccgaccatggttgaaatctcataggaaatgaagatttgcagcactgt |
50012694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 21444346 - 21443764
Alignment:
| Q |
1 |
aaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggtaagtgtttttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||| |
|
|
| T |
21444346 |
aaacctgtttatatttctttttcattcctctctctctaaaagagcttaagaaatacacatgttcttctttctgaagtaacgtgggcaagtgttttccaaa |
21444247 |
T |
|
| Q |
101 |
tattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgttcatcc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21444246 |
tattaaagattgatttttttttcttttttt---aaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgttcatcc |
21444150 |
T |
|
| Q |
201 |
ttgtaatatcaacttcatctaattatgtgcattcacttcttctctcacacccacttagatttatagtttgannnnnnnnnnnatttctactgagtcacta |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
21444149 |
ctgtaatatcaacttcatctaattatctgcattcacttcttctctcacacccacttagatttatagtttgatttttttttt-atttctactgagtcacca |
21444051 |
T |
|
| Q |
301 |
actcggtggtgagttaactcaacggtgtcttcttaccaagcaagaatagccactccagatgccacaaactgcctatattacgaacatctggttgctttta |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21444050 |
actcggtggtgagttaactcaacgacgtcttcttcccaagcaagaatagccactccagatgccacaaactgcctatattacgaacatctggttgctttta |
21443951 |
T |
|
| Q |
401 |
tttttgttgccaatatgagtcaacaatggcgaaaacttacacaatgnnnnnnntgggattttagaaaaccagtgatcaattgaattgaaaggaaaccgag |
500 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21443950 |
tttttgttgccaatatcagtcaacaatggtgaaaacttgcacaatgaaaaaaatgggattttagaaaaccagtgatcaattgaattgaagggaaaccgag |
21443851 |
T |
|
| Q |
501 |
ttgttggaacttgaaatgaagctgtttttatgaattttctccgaccatggttgaaatctcataggaaatgaagatttgcagcactgt |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21443850 |
ttgttggaacttgaaatgaagctgtttttatgaattttctccgaccatggttgaaatctcataggaaatgaagatttgcagcactgt |
21443764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 5 - 586
Target Start/End: Original strand, 42066288 - 42066872
Alignment:
| Q |
5 |
ctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggtaagtgtttttcaaatatt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
42066288 |
ctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtgggcaaatgttttccaaatatt |
42066387 |
T |
|
| Q |
105 |
aaagattgannnnnnnnnnnnnnnnnnnn-aaataaagattgaaattttgagcaacttcaatatatttttgagcaagttaaatcaaaatgttcatccttg |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
42066388 |
aaagattgattttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagttaaatcaaaatgttcatccatg |
42066487 |
T |
|
| Q |
204 |
taatatcaacttcatctaattatgtgcattcacttcttctctcacacccacttagatttatagtttgannnnnnnnnnnatttctactgagtcactaact |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
42066488 |
taatatcaacttcatctaattatgtgcattcacttcttctctcacatctacttagatttatagtttgatttttttttttatttctactgagtcactgact |
42066587 |
T |
|
| Q |
304 |
cggtggtgagttaactcaacggtgtcttcttaccaagcaagaatagccactccagatgccacaaactgcctatattacgaacatctggttgc--ttttat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
42066588 |
cggtggtgagttaactcaacggtgtcttcttcccaagcaagaatagccactccagatgccacaaactgcctatattacgaacatctggttgctttttttt |
42066687 |
T |
|
| Q |
402 |
ttttgttgccaatatgagtcaacaatggcgaaaacttacacaatgnnnnnnntgggattttagaaaaccagtgatcaattgaattgaaaggaaaccgagt |
501 |
Q |
| |
|
|||||| ||||| || |||||||||||| |||||||| ||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
42066688 |
ttttgtagccaacatcagtcaacaatggtgaaaacttgcacaatgaaaataataggattttagaaaatcagtgatcaattgaattgaagggaaaccgagt |
42066787 |
T |
|
| Q |
502 |
tgttggaacttgaaatgaagctgtttttatgaattttctccgaccatggttgaaatctcataggaaatgaagatttgcagcactg |
586 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42066788 |
tgttgaaacttgaaatgaagctgtttttatgaattttctccaaccatggttgaaatctcataggaaatgaagatttgcagcactg |
42066872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 673
Target Start/End: Complemental strand, 21443712 - 21443678
Alignment:
| Q |
639 |
tatgtgtgatgctgatttgatacaaccttcattct |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
21443712 |
tatgtgtgatgctgatttgatacaaccttcattct |
21443678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 673
Target Start/End: Original strand, 42066925 - 42066959
Alignment:
| Q |
639 |
tatgtgtgatgctgatttgatacaaccttcattct |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42066925 |
tatgtgtgatgctgatttgatacaaccttcattct |
42066959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 673
Target Start/End: Original strand, 50012746 - 50012780
Alignment:
| Q |
639 |
tatgtgtgatgctgatttgatacaaccttcattct |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
50012746 |
tatgtgtgatgctgatttgatacaaccttcattct |
50012780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University