View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18897_low_5 (Length: 625)

Name: NF18897_low_5
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18897_low_5
NF18897_low_5
[»] chr3 (5 HSPs)
chr3 (13-333)||(1328049-1328369)
chr3 (329-608)||(8528767-8529046)
chr3 (13-64)||(9794835-9794886)
chr3 (13-64)||(10284395-10284446)
chr3 (49-101)||(48921967-48922015)
[»] chr7 (2 HSPs)
chr7 (13-333)||(42541186-42541506)
chr7 (15-112)||(25594226-25594323)
[»] chr1 (2 HSPs)
chr1 (13-333)||(17649248-17649568)
chr1 (24-113)||(50225012-50225095)
[»] chr6 (3 HSPs)
chr6 (35-333)||(4745453-4745754)
chr6 (37-113)||(180931-181003)
chr6 (68-113)||(32058939-32058984)
[»] chr2 (4 HSPs)
chr2 (150-330)||(42238790-42238970)
chr2 (9-110)||(42238519-42238620)
chr2 (14-112)||(7016472-7016571)
chr2 (489-606)||(12251602-12251718)
[»] chr4 (3 HSPs)
chr4 (13-143)||(15496389-15496519)
chr4 (9-62)||(24177798-24177851)
chr4 (13-63)||(52575937-52575987)
[»] chr5 (2 HSPs)
chr5 (13-64)||(9978224-9978275)
chr5 (489-596)||(42120065-42120173)
[»] chr8 (1 HSPs)
chr8 (13-64)||(10636747-10636798)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 1328049 - 1328369
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1328049 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc 1328148  T
Q  113 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1328149 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaataggaaatagagattgttatgtttgatgaagaccaaccacaagaa 1328248  T
Q  213 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1328249 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 1328348  T
Q  313 atgtatttcttctttatttaa 333  Q
    |||||||||||||||||||||    
T  1328349 atgtatttcttctttatttaa 1328369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 329 - 608
Target Start/End: Complemental strand, 8529046 - 8528767
Alignment:
Q  329 tttaagggaaaaactataaacgatgttatgtattaaagacaataaagttaataataaatttataagtttcgaatagatttcctaaannnnnnnataaaag 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||       |||||||    
T  8529046 tttaagggaaaaactataaacgatgttatgtattaaagacaataaagttaataataaatttataagtttcaaaccgatttcctaaaataatttataaaag 8528947  T
Q  429 tccactgaggtatgtatcgatgtgtattacaaaatnnnnnnnnttatgaccgaccctacgatattttatgttgacagacattctccagccattagatccc 528  Q
    ||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8528946 tccactgaggtatgtatcgatgtgtataacaaaataaaaaaaattatgaccgaccctacgatattttatgttgatagacattctccagccattagatccc 8528847  T
Q  529 aatagaaatattaaacaattatattcaacgaaaatgaccattgtcaccaagaaaagatcatcaaaactgaatattgtatt 608  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  8528846 aatagaaatattaaacaattatattgaacgaaaatgaccactgtcaccaagaaaagaccatcaaaactgaatattgtatt 8528767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 9794886 - 9794835
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 64  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  9794886 aatatataaacatatagagaactaaatatattcttcatgaaaaattatagga 9794835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 10284395 - 10284446
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 64  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10284395 aatatataaacatatagaggactaaacatattcttcatgaaaaattatagga 10284446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 48922015 - 48921967
Alignment:
Q  49 atgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatc 101  Q
    |||||||||||||||||||||| ||||||||   |||||||||||||||||||    
T  48922015 atgaaaaattataggaagccat-gaaccacc---taacatagatttaaacatc 48921967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 42541506 - 42541186
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42541506 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc 42541407  T
Q  113 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42541406 tgaatgtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatatagattgttatgtttgatgaagaccaaccacaagaa 42541307  T
Q  213 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42541306 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 42541207  T
Q  313 atgtatttcttctttatttaa 333  Q
    |||||||||||||||||||||    
T  42541206 atgtatttcttctttatttaa 42541186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 25594323 - 25594226
Alignment:
Q  15 tatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 112  Q
    |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  25594323 tatatatacatataaagaactaaacatattcttcatgaaaaattataggaagccatgaaaccacctcttaacatagatttaaacatctcttttaatcc 25594226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 17649248 - 17649568
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 112  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17649248 aatatataaacatatagagaactaaacatattcttcatgaaatattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc 17649347  T
Q  113 tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17649348 tgaaagtgaagaggaaacagataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaa 17649447  T
Q  213 gtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17649448 gtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatggta 17649547  T
Q  313 atgtatttcttctttatttaa 333  Q
    |||||||||||||||||||||    
T  17649548 atgtatttcttctttatttaa 17649568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 50225012 - 50225095
Alignment:
Q  24 atatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcct 113  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||      | | |||||||||||||||||||||| |||||||    
T  50225012 atatagaaaactaaacatattcttcatgaaaaattataggaagccatgga------tttaaacatagatttaaacatcccttttaatcct 50225095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 35 - 333
Target Start/End: Original strand, 4745453 - 4745754
Alignment:
Q  35 taaacatattcttcatgaaaaattataggaagccatggaaccacctcttaa---catagatttaaacatcccttataatcctgaaagtgaagaggaaaca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||    
T  4745453 taaacatattcttcatgaaaaattataggaagccatggaaccacctcttaataacatagatttaaacatcccttttaatcctgaaagtgaagaggaaaca 4745552  T
Q  132 aataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattg 231  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4745553 gataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattg 4745652  T
Q  232 cagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttattt 331  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4745653 cagatatagagtatgactttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttattt 4745752  T
Q  332 aa 333  Q
    ||    
T  4745753 aa 4745754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 181003 - 180931
Alignment:
Q  37 aacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcct 113  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||   |||||||||||||||||||| || |||||||    
T  181003 aacatattcttcatgaaatattataggaagtcat-gaaccacc---taacatagatttaaacatccattttaatcct 180931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 32058939 - 32058984
Alignment:
Q  68 catggaaccacctcttaacatagatttaaacatcccttataatcct 113  Q
    |||| |||| ||||||||||||||||||||||||| || |||||||    
T  32058939 catgaaaccccctcttaacatagatttaaacatccattttaatcct 32058984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 150 - 330
Target Start/End: Original strand, 42238790 - 42238970
Alignment:
Q  150 tatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccacaagaagtttatgacaccaacattgcagatatagagtatgact 249  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  42238790 tatgtggaagaaagtgaagaggaaatagagattgttatgtttgacgaagaccaaccacaagaagttgatgacaccaacatttcagatatagagtttgact 42238889  T
Q  250 ttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatggtaatgtatttcttctttatt 330  Q
    ||||||| ||||||||||  ||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  42238890 ttgaagaaaatgttcaaccagttgatgagagtgaacttgaaggagtacttaattctgatggtaatgtatttcttctttatt 42238970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 42238519 - 42238620
Alignment:
Q  9 caagaatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttata 108  Q
    ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  42238519 caagagtatatatacatatagagaactaaacatattcttcatgaaaaattataggaagccatggaaccccctcttaacatagatttaaacatccctttta 42238618  T
Q  109 at 110  Q
    ||    
T  42238619 at 42238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 7016571 - 7016472
Alignment:
Q  14 atatataaacatatagagaattaaacatattcttcatgaaaaa-ttataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 112  Q
    ||||||| |||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||| | ||| |||||||||||||||||||||| ||||||    
T  7016571 atatatacacatatagagaactaaacatattcttcataaaaaaattataggaatccatggaaccccatctcaacatagatttaaacatcccttttaatcc 7016472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 606
Target Start/End: Complemental strand, 12251718 - 12251602
Alignment:
Q  489 atattttatgttgacagacattctccagccattagatcccaatagaaatattaaacaattatattcaacgaaaatgaccattgtc-accaagaaaagatc 587  Q
    ||||||||||| || |||||||||||| |||| |||| | |||||||||| ||| |||||||||| || ||| |||||||||| | |||||| ||||| |    
T  12251718 atattttatgtggatagacattctccatccat-agattcaaatagaaatagtaa-caattatattgaatgaacatgaccattggccaccaagcaaagacc 12251621  T
Q  588 atcaaaactgaatattgta 606  Q
    |||||| ||||||||||||    
T  12251620 atcaaacctgaatattgta 12251602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 15496519 - 15496389
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttataatcc 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  15496519 aatatataaacatatagagaactaaacatattcttcatgaaaaattataggaagccatggaaccacctctttacatagatttaaacatcccttttaatcc 15496420  T
Q  113 tgaaagtgaagaggaaacaaataatgatcct 143  Q
    ||||||||||||||||||| |||||||||||    
T  15496419 tgaaagtgaagaggaaacatataatgatcct 15496389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 24177798 - 24177851
Alignment:
Q  9 caagaatatataaacatatagagaattaaacatattcttcatgaaaaattatag 62  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  24177798 caagagtatataaacatatagagaattaaacatattcttcatgaaagattatag 24177851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 52575987 - 52575937
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagg 63  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  52575987 aatatataaatatatagagaactaaacatattcttcatgaaaaattatagg 52575937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 9978275 - 9978224
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9978275 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 9978224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 489 - 596
Target Start/End: Complemental strand, 42120173 - 42120065
Alignment:
Q  489 atattttatgttgacagacattctccagccattagatcccaatagaaatattaaacaattatattcaacgaaaatgaccatt-gtcaccaagaaaagatc 587  Q
    ||||||||||| || |||||||||| |||| ||| || ||||||||||||| ||||||||||||| || |||||| |||||| ||||||||| | ||| |    
T  42120173 atattttatgtggatagacattctctagcctttaaattccaatagaaatatcaaacaattatattgaatgaaaatcaccattggtcaccaagcatagacc 42120074  T
Q  588 atcaaaact 596  Q
    |||||||||    
T  42120073 atcaaaact 42120065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 10636798 - 10636747
Alignment:
Q  13 aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga 64  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10636798 aatatataaacatatagagtactaaacatattcttcatgaaaaattatagga 10636747  T

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