View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18897_low_6 (Length: 565)
Name: NF18897_low_6
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 367 - 549
Target Start/End: Original strand, 43508241 - 43508423
Alignment:
| Q |
367 |
ctcttcttgaaaaacttctccaaaacccagcactataaaatctctcccacatctctttctcaagagcaatagcatcatcatcttcagatgaatattcaag |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43508241 |
ctcttcttgaaaaacttctccaaaacccagcactataaaatctctcccacatctctttctcaagagcaatagcatcatcatcttcagatgaatattcaag |
43508340 |
T |
|
| Q |
467 |
tctttttatatctgaagaaccgtcgtttacacacattggagaaacacgaattacaccgttaacgtagtttatatcacaacaac |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43508341 |
tctttttatatctgaagaaccgtcgtttacacacattggagaaacacgaattacaccgttaacgtagtttatatcacaacaac |
43508423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 43508043 - 43508165
Alignment:
| Q |
166 |
caagttgcattgcattggcaaatttctactaaaaacaaagaaacagcaatcaattcaggttctgtagcatactgttgacttgactcttttgtcctttgtt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43508043 |
caagttgcattgcattggcaaatttctactaaaaacaaagaaacagcaatcaattcaggttctgtagcatactgttgacttgactcttttgtcctttgtt |
43508142 |
T |
|
| Q |
266 |
tcagtactattcatttcactttc |
288 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43508143 |
tcagtactattcatttcactttc |
43508165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 43507915 - 43508015
Alignment:
| Q |
39 |
gcaatcgaattggagaagctagcacattgaaaaccnnnnnnnt--aaaatacaagtcatggtcatggatgcacagccctctcaacagtaacgtaacaatc |
136 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43507915 |
gcaatcgaattggagaagctaacacattgaaaaccaaaaaaaataaaaaaacaagtcatggtcatggatgcacagccctctcaacagtaacgtaacaatc |
43508014 |
T |
|
| Q |
137 |
c |
137 |
Q |
| |
|
| |
|
|
| T |
43508015 |
c |
43508015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University