View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18897_low_8 (Length: 491)

Name: NF18897_low_8
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18897_low_8
NF18897_low_8
[»] chr1 (8 HSPs)
chr1 (135-474)||(34817454-34817793)
chr1 (24-69)||(28739402-28739447)
chr1 (24-69)||(50754748-50754793)
chr1 (24-70)||(9379841-9379887)
chr1 (24-70)||(9884864-9884910)
chr1 (24-65)||(15928163-15928204)
chr1 (24-71)||(6539648-6539695)
chr1 (32-70)||(4579191-4579229)
[»] chr2 (5 HSPs)
chr2 (24-70)||(12918556-12918602)
chr2 (24-70)||(39819086-39819132)
chr2 (24-69)||(7755360-7755405)
chr2 (26-70)||(30610247-30610291)
chr2 (24-65)||(15562232-15562273)
[»] chr5 (4 HSPs)
chr5 (24-70)||(29385374-29385420)
chr5 (24-70)||(1839994-1840040)
chr5 (31-70)||(19417468-19417507)
chr5 (97-131)||(9177967-9178001)
[»] chr7 (4 HSPs)
chr7 (24-69)||(7211884-7211929)
chr7 (24-69)||(17272723-17272768)
chr7 (28-69)||(29681789-29681830)
chr7 (24-64)||(7211987-7212027)
[»] chr6 (1 HSPs)
chr6 (28-69)||(2543836-2543877)
[»] chr3 (4 HSPs)
chr3 (24-69)||(11512411-11512456)
chr3 (24-70)||(20286927-20286973)
chr3 (24-69)||(31342031-31342076)
chr3 (29-65)||(20801112-20801148)
[»] chr4 (3 HSPs)
chr4 (24-70)||(31846880-31846926)
chr4 (24-68)||(31012152-31012196)
chr4 (90-131)||(33380737-33380778)
[»] chr8 (2 HSPs)
chr8 (24-67)||(43465112-43465155)
chr8 (90-127)||(16687519-16687556)
[»] scaffold0110 (1 HSPs)
scaffold0110 (98-135)||(26631-26668)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 135 - 474
Target Start/End: Complemental strand, 34817793 - 34817454
Alignment:
Q  135 gacatttaatatgagataggagatgaatgaaatattaaaatgacaacacattgtaaggtcgccgctttttattgaaataaaatctcaaccattaaacaag 234  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34817793 gacatttaatatgagataggagatgaatgaaatattaaaatggcaacacattgtaaggtcgccgctttttattgaaataaaatctcaaccattaaacaag 34817694  T
Q  235 aggccggtgaggttatgagctgtagcatgaacgtgtcacgagacaatttataaagtgttagttagttagttacactatgtatcagtacagtaatagtagt 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34817693 aggccggtgaggttatgagctgtagcatgaacgtgtcacgagacaaaaaataaagtgttagttagttagttacactatggatcagtacagtaatagtagt 34817594  T
Q  335 gtatttagttattagcatgtggttgttggaagtttggcattttcaaccagttatttgtcccatttactgtctattcttcaacacaaacatgttgattcat 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34817593 gtatttagttattagcatgtggttgttggaagtttggcattttcaaccagttatttgtcccatttactgtctattcttcaacacaaacatgttgattcat 34817494  T
Q  435 ccttcactttcaattaatgttgcttcatatacaattgtat 474  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34817493 ccttcactttcaattaatgttgcttcatatacaattgtat 34817454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 28739402 - 28739447
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  28739402 aaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaa 28739447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 50754793 - 50754748
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  50754793 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 50754748  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 9379887 - 9379841
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||    
T  9379887 aaagaagaaagccacatgtgacattgtggttggccaatatcaccaat 9379841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 9884910 - 9884864
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||    
T  9884910 aaagaagaaagccacatgtgacattgtggttgaccaatgtcaccaat 9884864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 15928163 - 15928204
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtca 65  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  15928163 aaagaagaaagccacatgtgacattgtggttggccaatgtca 15928204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 6539648 - 6539695
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaata 71  Q
    |||||| |||| ||||||||||||||| |||| |||||||||||||||    
T  6539648 aaagaagaaagtcacatgtgacattgtggttgaccaatgtcaccaata 6539695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 4579229 - 4579191
Alignment:
Q  32 aagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  4579229 aagccacttgtgacattgtggttggccaatgtcaccaat 4579191  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 12918602 - 12918556
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  12918602 aaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaat 12918556  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 39819132 - 39819086
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||    
T  39819132 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaat 39819086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 7755405 - 7755360
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7755405 aaagaaaaaagccacttgtgacattgtggttggccaatgtcaccaa 7755360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 30610247 - 30610291
Alignment:
Q  26 agaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||    
T  30610247 agaaaaaagtcacatgtgacattatggttggccaatgtcaccaat 30610291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 15562273 - 15562232
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtca 65  Q
    |||||| |||| ||||||||||||||| ||||||||||||||    
T  15562273 aaagaagaaagtcacatgtgacattgtggttggccaatgtca 15562232  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 29385374 - 29385420
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||    
T  29385374 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaat 29385420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 1840040 - 1839994
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||    
T  1840040 aaagaagaaagccacatgtgacattgtggttggccaatgtcatcaat 1839994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 19417507 - 19417468
Alignment:
Q  31 aaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  19417507 aaagtcacatgtgacattgtagttgaccaatgtcaccaat 19417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 9177967 - 9178001
Alignment:
Q  97 ccaatatcaccaatcacaatgtcatccaagtgcta 131  Q
    ||||||||||||| |||||||||||||||||||||    
T  9177967 ccaatatcaccaaccacaatgtcatccaagtgcta 9178001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 7211929 - 7211884
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  7211929 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 7211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 17272768 - 17272723
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  17272768 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 17272723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 29681830 - 29681789
Alignment:
Q  28 aaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  29681830 aaaaaagccacatgtgacgttgtggttggccaatgtcaccaa 29681789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 7211987 - 7212027
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtc 64  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  7211987 aaagaagaaagtcacatgtgacattgtggttggccaatgtc 7212027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 2543836 - 2543877
Alignment:
Q  28 aaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  2543836 aaaaaagccacatgtgacattgtggttggccaatgtcaccaa 2543877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 11512456 - 11512411
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  11512456 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 11512411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 20286973 - 20286927
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||    
T  20286973 aaagaagaaagccacatgtgacattgtggttggccaatgtcatcaat 20286927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 31342076 - 31342031
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaa 69  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||    
T  31342076 aaagaagaaagctacatgtgacattgtggttggccaatgtcaccaa 31342031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 20801112 - 20801148
Alignment:
Q  29 aaaaagccacatgtgacattgtagttggccaatgtca 65  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  20801112 aaaaagccacatgttacattgtagttgggcaatgtca 20801148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 31846880 - 31846926
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcaccaat 70  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||    
T  31846880 aaagaagaaagccacatgtgacattgtggttggccaatatcaccaat 31846926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 31012196 - 31012152
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcacca 68  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||||    
T  31012196 aaagaaaaaagtcacatgtgacattgtggttggtcaatgtcacca 31012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 33380737 - 33380778
Alignment:
Q  90 aatgttaccaatatcaccaatcacaatgtcatccaagtgcta 131  Q
    ||||| || ||||||||||| |||||||||||||||||||||    
T  33380737 aatgtcacaaatatcaccaaccacaatgtcatccaagtgcta 33380778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 43465155 - 43465112
Alignment:
Q  24 aaagaaaaaagccacatgtgacattgtagttggccaatgtcacc 67  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||    
T  43465155 aaagaagaaagccacatgtgatattgtggttggccaatgtcacc 43465112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 16687556 - 16687519
Alignment:
Q  90 aatgttaccaatatcaccaatcacaatgtcatccaagt 127  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  16687556 aatgtcaccaatatcaccaaccacaatgtcatccaagt 16687519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 26631 - 26668
Alignment:
Q  98 caatatcaccaatcacaatgtcatccaagtgctatccg 135  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  26631 caatatcaccaaccacaatgtcatccaagtgttatccg 26668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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