View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_low_9 (Length: 457)
Name: NF18897_low_9
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 55084313 - 55083897
Alignment:
| Q |
19 |
atgataatagtcaaattaaattaatatgagggtgggttgcatagcatgcaaaatgaatgaattaaccttaggatgaaaaagaaaaagtagggtgtgcaat |
118 |
Q |
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| T |
55084313 |
atgataatagtcaaattaaattaatatgagggtgggttgcatagcatgcaaaatgaatgaattaaccttaggatgaaaaagaaaaagtagggtgtgcaat |
55084214 |
T |
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| Q |
119 |
ccaaaaaccagagcacgcactgaaagcaagcaatattaaaatatgaaaatgagaatggtgaaacaagcatataataatataaataaggaggattgtaatt |
218 |
Q |
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| T |
55084213 |
ccgaaaaccagagcacgcactgaaagcaagcaatattaaaatatgaaaatgagaatggtgaaacaagcatataata---taaataaggaggattgtaatt |
55084117 |
T |
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| Q |
219 |
tgtatagtatacctccgttgagaatgaaattcatgagatgaaagattttctgcgtagtccatccatattcaggtactctaagttgaattctaaccaattg |
318 |
Q |
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| T |
55084116 |
tgtatagtatacctccgttgagaatgaaattcatgagatgaaagattttctgcgtagtccatccatattcaggtactctaagttgaattctaaccaattg |
55084017 |
T |
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| Q |
319 |
aaactgcagggcatgagacagagttagaaaatggaaaaagaaaagagtgaaagtaaagtagttagttagttacgagagcaacaaaagagacaagagcata |
418 |
Q |
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| T |
55084016 |
aaactgcagggcatgagacagagttagaaaatggaaaaagaaaagagtgaaagtaaagtagttagttagttacgagagcaacaaaagagacgacggcata |
55083917 |
T |
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| Q |
419 |
agcggaagagatgaagtaga |
438 |
Q |
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| T |
55083916 |
agcggaagagatgaagtaga |
55083897 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 7963074 - 7963018
Alignment:
| Q |
253 |
gagatgaaagattttctgcgtagtccatccatattcaggtactctaagttgaattct |
309 |
Q |
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| T |
7963074 |
gagatggaaaatcttctgagtagtccaaccgtattcaggtactctaagttcaattct |
7963018 |
T |
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