View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_high_12 (Length: 359)
Name: NF18898_high_12
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 47836567 - 47836892
Alignment:
| Q |
16 |
atttaatgcttaaagaaaaatgtattggttcaactcctatctataatgaataaataaataatatttggtttcatttttggagaatcaaaagtgattgttg |
115 |
Q |
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| T |
47836567 |
atttaatgcttaaagagaaatgtattggttcaactcctatctataatgaataaataaataatatttggtttcatttttggagaat-aaaagtgattgttg |
47836665 |
T |
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| Q |
116 |
aattgattttatcatgttggatgattaaaaggaaaattgattttgcttgtagaatttatttttacttagaagttaaaatttgaagtttgtcttctaaaag |
215 |
Q |
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| T |
47836666 |
aattgattttatcatgtttgatgattaaaaggaaaattgattttgcttgtagaatttatttttactt-gaagttaaaatttgaagtttgtcttctaaaag |
47836764 |
T |
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| Q |
216 |
tgatgttagcctttgtatcgcgaaaaactagttgtgtttttctacaattggcctctcgcctttgctgaggcttgctgtgttgtatctgtctggaattttt |
315 |
Q |
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| T |
47836765 |
tgatgttagcctttgtattgcgaaaaactaattgtgtttttctacaattgtcctctcgcctttgctgaggcttgctgt-ttgtatctgtctggaattttt |
47836863 |
T |
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| Q |
316 |
atcaagctaattttcatttctgttgttgt |
344 |
Q |
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| T |
47836864 |
atcaagctaattttcatttctgttgttgt |
47836892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 29779202 - 29779138
Alignment:
| Q |
108 |
gattgttgaattgattttatcatgtt-ggatgattaaaaggaaaattgattttgcttgtagaatt |
171 |
Q |
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| T |
29779202 |
gattgtagaattgattttatcatgtttggatgatttaaaagagaattgattttgcttgtagaatt |
29779138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 17898274 - 17898212
Alignment:
| Q |
110 |
ttgttgaattgattttatcatgtt-ggatgattaaaaggaaaattgattttgcttgtagaatt |
171 |
Q |
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| T |
17898274 |
ttgtagaattgattgtatcatgtttggatggtttaaagtataattgattttgcttgtagaatt |
17898212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 1872365 - 1872308
Alignment:
| Q |
115 |
gaattgattttatcatgtt-ggatgattaaaaggaaaattgattttgcttgtagaatt |
171 |
Q |
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| T |
1872365 |
gaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaatt |
1872308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 11650840 - 11650798
Alignment:
| Q |
186 |
agttaaaatttgaagtttgtcttctaaaagtgatgttagcctt |
228 |
Q |
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| T |
11650840 |
agttaaaatttgtagtttgacttctaaaagtgatgttagcctt |
11650798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 46870357 - 46870407
Alignment:
| Q |
110 |
ttgttgaattgattttatcatg-ttggatgattaaaaggaaaattgatttt |
159 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||| |||||||||| |
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| T |
46870357 |
ttgtagaattgattttatcatgtttggatgatttaaaggataattgatttt |
46870407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 1879094 - 1879158
Alignment:
| Q |
108 |
gattgttgaattgattttatcatg-ttggatgattaaaaggaaaattgattttgcttgtagaatt |
171 |
Q |
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|||||| ||||||||||||||||| |||||||| | ||| || |||| ||||| ||||||||||| |
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| T |
1879094 |
gattgtagaattgattttatcatgtttggatgagttaaaagagaatttattttacttgtagaatt |
1879158 |
T |
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