View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_high_14 (Length: 326)
Name: NF18898_high_14
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 36388562 - 36388265
Alignment:
| Q |
18 |
taatgttgacccaaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaagacatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388562 |
taatgttgacccaaaaataataatattacagttattcaatcaaaacttagacattattagcacttgctgaagaaataggagagattgtacgcaagacatt |
36388463 |
T |
|
| Q |
118 |
gatataccatatggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacactaaacaaactaatatatgacactttctttaagtcagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36388462 |
gatataccatatggcacaaaatccatgcaatagttgaacaccacaaaaagaatagctgacattaaacaaactaatatatgacactttctttaagtcagaa |
36388363 |
T |
|
| Q |
218 |
tgattgcaactagtaattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctcccttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388362 |
tgattgcaactagtaattaatataaagaacaattgcaattatagaagctacaagaattgcaattttatcctaaaaaataaatcacataccctcccttt |
36388265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 36388226 - 36388194
Alignment:
| Q |
246 |
acaattgcaattatagaagctacaagaattgca |
278 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36388226 |
acaattgcaattatagaagctacaagaattgca |
36388194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 36374607 - 36374561
Alignment:
| Q |
123 |
accatatggcacaaaatccatgcaatagttgaacaccacaaaaagaa |
169 |
Q |
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||||||| ||||| | |||||| |||||||||||||||||||||||| |
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| T |
36374607 |
accatattgcacacagtccatgtaatagttgaacaccacaaaaagaa |
36374561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 36412262 - 36412230
Alignment:
| Q |
246 |
acaattgcaattatagaagctacaagaattgca |
278 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
36412262 |
acaattgcaactatagaagctacaagaattgca |
36412230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 36417593 - 36417561
Alignment:
| Q |
246 |
acaattgcaattatagaagctacaagaattgca |
278 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
36417593 |
acaattgcaactatagaagctacaagaattgca |
36417561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 36426421 - 36426389
Alignment:
| Q |
246 |
acaattgcaattatagaagctacaagaattgca |
278 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
36426421 |
acaattgcaactatagaagctacaagaattgca |
36426389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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