View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_high_19 (Length: 301)
Name: NF18898_high_19
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 41169898 - 41169615
Alignment:
| Q |
1 |
caaagggaacataccaaggcagtacgtcccatagaccatagtcttgaacataattcacttaaacacatgaaacaaacacttcctatatatttattgcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41169898 |
caaagggaacataccaaggcagtacgtcccatagaccatagtcttgaacataattcacttaaacacatgaaacaaacacttcctatatatttattgcacc |
41169799 |
T |
|
| Q |
101 |
gcaagtaccattccacatttaccaaaaatacaaacttatctaacctatcctatagactcgaaaaaacatcagacgtctaattacttttattttacctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41169798 |
gcaagtaccattccacatttaccaaaaatacaaacttatctaacctatcctatagactcgaaaaaacatcagacgtctaattacttttattttacctgaa |
41169699 |
T |
|
| Q |
201 |
actgtgtaatcnnnnnnnctcttccattacaaactctaatggctgaaaccaaatgatcagaacagtatgaaggcatgatcaagg |
284 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41169698 |
actgtgtaatctttttttctcttccattacaaactctaatggctgaaaccaaatgatcagaacagtatgaaggaatgatcaagg |
41169615 |
T |
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