View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_high_2 (Length: 639)
Name: NF18898_high_2
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 43 - 622
Target Start/End: Complemental strand, 39626045 - 39625460
Alignment:
| Q |
43 |
ccattagataggatgggctaaatgatcaagagatgtcataaaaaatctgggtataaggtcattattcagactttcatttgtaaattataatatcatgtgc |
142 |
Q |
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| T |
39626045 |
ccattagataggatgggctaaatgatcaagagatgtcataaaaaatctgggtataaggtcattattcagactttcatttgtaaattataatatcatgtgc |
39625946 |
T |
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| Q |
143 |
tacattcctgtctctcttttacccttcacatctaaatgctaaattttcaaacttcaaacactagcacgtttttagccaaaattgataagagttttaacca |
242 |
Q |
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| T |
39625945 |
tacattcctgtctctcttttaccctttacatctaaatgctaaattttcaaacttcaaacactagcacgtttttagccaaaattgataagagttttaacca |
39625846 |
T |
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| Q |
243 |
agaagggagacatttgttaaaaccgttccacattaaattcttattctaaaagaatgttcgattatttaacaattgatattaatttctggtttcacacttt |
342 |
Q |
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| T |
39625845 |
agaagggagacatttgttaaaaccgttccacattaaattcttattctaaaagaatgttcaattatttaacaattgatattaatttctggtttcacacttt |
39625746 |
T |
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| Q |
343 |
tttgtgttcaaacaa-nnnnnnnnnaaaataacaaggtggaagactccaaccaccctagaacttgttattaagtaaatatataacatttatctatgaagt |
441 |
Q |
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| T |
39625745 |
tttgtgttcaaacaattttttttttaaaataacaaggtggaagactccaaccaccctagaacttgttattaagtaaat-tataacatttatctatgaagt |
39625647 |
T |
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| Q |
442 |
cagtatcatgagttcactttacaacctaaacccaaatcgccacccactccaactatttgagtcaagtgg------cagaaacttgttacagaagaatgca |
535 |
Q |
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| T |
39625646 |
cagtatcatgagttcactctacaacctaaacccaaatcgccacccactccaactatttgagtcaagtggcatgtacagaaacttgttacagaagaatgca |
39625547 |
T |
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| Q |
536 |
tttaaaatcaagaaggcagctgcaaattaatcaacctgatttggattcaagtacaagacggatggtcacagcatgagcccaattaat |
622 |
Q |
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| T |
39625546 |
tttaaaatcaagaaggcagctgcaaattaatcaacctgatttggattcaagtacaagacggatggtcacagcatgagcccaattaat |
39625460 |
T |
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