View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18898_high_25 (Length: 225)

Name: NF18898_high_25
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18898_high_25
NF18898_high_25
[»] chr3 (14 HSPs)
chr3 (11-203)||(2659645-2659837)
chr3 (35-118)||(9595168-9595251)
chr3 (32-118)||(2644879-2644968)
chr3 (34-129)||(7324950-7325045)
chr3 (50-127)||(2630766-2630843)
chr3 (40-116)||(747672-747748)
chr3 (35-127)||(2501596-2501688)
chr3 (40-118)||(679754-679832)
chr3 (32-118)||(2491521-2491607)
chr3 (38-99)||(9562505-9562566)
chr3 (40-123)||(755167-755250)
chr3 (164-203)||(2644990-2645029)
chr3 (50-94)||(2476115-2476159)
chr3 (163-203)||(2501523-2501563)
[»] scaffold0097 (1 HSPs)
scaffold0097 (164-200)||(34028-34064)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 2659645 - 2659837
Alignment:
Q  11 catcatcaggtcgatgcagtaatgtccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggatt 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2659645 catcatcaggtcgatgcagtgatgtccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaattgaagggatt 2659744  T
Q  111 ggagaatcgcacataactatgtcacgatcataataataatcataatcacaagaatttgttagcatgaggtggtggcgcttggttgacatacga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659745 ggagaatcgcacataactatgtcacgatcataataataatcataatcacaagaatttgttagcatgaggtggtggcgcttggttgacatacga 2659837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 9595168 - 9595251
Alignment:
Q  35 tccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatc 118  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||||| |||| |||  |||||||||||||    
T  9595168 tccatttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggagaatc 9595251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 2644879 - 2644968
Alignment:
Q  32 atgtccatttgtgagagtattag---gaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatc 118  Q
    |||||| |||||||||||| |||   ||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||    
T  2644879 atgtccgtttgtgagagtactagtaggaaggtaaagttgtgtttgtgtaacaatggtagaagtagaaaaaggtgaagggattggggaatc 2644968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 7324950 - 7325045
Alignment:
Q  34 gtccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatcgcacataacta 129  Q
    ||||||||||||||||| ||| |||||  |||||||||||||||| ||||| ||||||||| ||||| ||||| ||||| |||||  |||||||||    
T  7324950 gtccatttgtgagagtactagaaatgtgtagttgtgtttgtgtaaaaacggcagaagtagaaaaaagcgaaggaattggggaatcatacataacta 7325045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 2630843 - 2630766
Alignment:
Q  50 attaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatcgcacataac 127  Q
    |||||||  ||||||||||||||||| ||||| ||| |||||||| ||||| |||||||||||||||||  |||||||    
T  2630843 attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggagaatcatacataac 2630766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 747672 - 747748
Alignment:
Q  40 ttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaa 116  Q
    |||| ||||||||||||  |||||||||||| |||||||||||| |||||||||| ||||  || ||||||||||||    
T  747672 ttgtaagagtattaggagggtaaagttgtgtatgtgtaacaacgatagaagtagataaaaccgaggggattggagaa 747748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 2501688 - 2501596
Alignment:
Q  35 tccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatcgcacataac 127  Q
    |||||||||||||||| |||||||||  |||||||||||||||| ||| | ||||||||| ||| |  |||||||||| |||||  |||||||    
T  2501688 tccatttgtgagagtactaggaatgtgtagttgtgtttgtgtaagaactgcagaagtagaaaaaggcaaagggattggggaatcatacataac 2501596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 679754 - 679832
Alignment:
Q  40 ttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatc 118  Q
    |||| ||| ||||||||  |||||||||||| |||||||||||||||||||| || ||||  || ||||||||||||||    
T  679754 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatc 679832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 2491607 - 2491521
Alignment:
Q  32 atgtccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatc 118  Q
    |||||||||||||||| || |||||  ||||||||| || ||||||| ||||||||||||||| ||||| || || ||||| |||||    
T  2491607 atgtccatttgtgagattagtaggagggtaaagttgggtctgtgtaataacggtagaagtagaaaaaagcgagggtattggggaatc 2491521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 9562505 - 9562566
Alignment:
Q  38 atttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaa 99  Q
    |||||||||| ||||||||  |||||||||||| ||||||||| ||||||||||||| ||||    
T  9562505 atttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaa 9562566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 755167 - 755250
Alignment:
Q  40 ttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaagtgaagggattggagaatcgcaca 123  Q
    |||||| |||||| |||  |||||||||||| ||||||| ||| ||||||||||| ||||  || |||||||| ||||| ||||    
T  755167 ttgtgatagtattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattggggaatcacaca 755250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 2644990 - 2645029
Alignment:
Q  164 atttgttagcatgaggtggtggcgcttggttgacatacga 203  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  2644990 atttgttagcatgaggtggtggcgtttggttgccatacga 2645029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 2476159 - 2476115
Alignment:
Q  50 attaggaatgtaaagttgtgtttgtgtaacaacggtagaagtaga 94  Q
    |||||||  |||||||||||| |||||||||||||| ||||||||    
T  2476159 attaggagggtaaagttgtgtctgtgtaacaacggttgaagtaga 2476115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 2501563 - 2501523
Alignment:
Q  163 aatttgttagcatgaggtggtggcgcttggttgacatacga 203  Q
    ||||||||||||||| || | ||||||||||||||||||||    
T  2501563 aatttgttagcatgatgtagcggcgcttggttgacatacga 2501523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 34064 - 34028
Alignment:
Q  164 atttgttagcatgaggtggtggcgcttggttgacata 200  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  34064 atttgttaacatgaggtggtggtgcttggttgacata 34028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University