View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18898_high_3 (Length: 604)

Name: NF18898_high_3
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18898_high_3
NF18898_high_3
[»] chr8 (3 HSPs)
chr8 (229-588)||(39895305-39895663)
chr8 (181-217)||(39895705-39895741)
chr8 (31-81)||(7830070-7830119)
[»] chr3 (11 HSPs)
chr3 (264-494)||(21219964-21220181)
chr3 (387-584)||(44643555-44643752)
chr3 (23-81)||(37472120-37472178)
chr3 (23-81)||(35344208-35344266)
chr3 (31-81)||(21174475-21174524)
chr3 (31-81)||(47097000-47097049)
chr3 (31-81)||(53142917-53142966)
chr3 (31-81)||(30891599-30891648)
chr3 (31-81)||(30895609-30895658)
chr3 (31-81)||(47094697-47094746)
chr3 (4-69)||(49003455-49003520)
[»] chr5 (6 HSPs)
chr5 (260-494)||(9168930-9169149)
chr5 (1-81)||(25057550-25057630)
chr5 (31-81)||(5629478-5629527)
chr5 (31-81)||(38424111-38424160)
chr5 (6-70)||(41555192-41555255)
chr5 (25-81)||(42831030-42831085)
[»] chr1 (5 HSPs)
chr1 (1-81)||(12946437-12946517)
chr1 (31-81)||(48344307-48344356)
chr1 (31-81)||(48350689-48350738)
chr1 (31-81)||(51149101-51149150)
chr1 (41-81)||(48826765-48826805)
[»] chr2 (5 HSPs)
chr2 (1-81)||(8550329-8550409)
chr2 (23-81)||(32342045-32342103)
chr2 (31-81)||(35998210-35998259)
chr2 (31-81)||(38035752-38035801)
chr2 (31-81)||(32869374-32869423)
[»] chr7 (4 HSPs)
chr7 (1-81)||(28348987-28349067)
chr7 (4-70)||(26405715-26405781)
chr7 (4-69)||(43655429-43655493)
chr7 (6-70)||(28346593-28346656)
[»] chr6 (3 HSPs)
chr6 (43-81)||(20822076-20822114)
chr6 (31-81)||(32696061-32696110)
chr6 (31-81)||(168311-168360)
[»] chr4 (3 HSPs)
chr4 (31-81)||(43725259-43725308)
chr4 (25-81)||(45048199-45048254)
chr4 (31-81)||(17509488-17509537)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 229 - 588
Target Start/End: Complemental strand, 39895663 - 39895305
Alignment:
Q  229 ctctattgataatgatatgaacaacaagattgttcaatttgaagatcatttggtggtaaaagtggaaacaaagaacataatcaaacaaaacaattttggt 328  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39895663 ctctattgataatgatatgaacaacaagaaagtacaatttgaagatcatttggtggtaaaagtggacacaaagaacataatcaaacaaaacaattttggt 39895564  T
Q  329 ctttcaacgttgtacattttcacttgtgcaaacataatgatttatctcagtcagagagtgaagtcttggtcttcaagcggtacaagagctttttcttcct 428  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39895563 cttgca-cgttgtacattttcacttgtgcaaacataatgatttatctcagtcagagagtgaagtcttggtcttcaagcggtacaagagctttttcttcct 39895465  T
Q  429 agaacttgtgttgtcaatggtaagaacaactttaccaggttcattaattttaaaactgttgcaaagcactgcttcttctgatgaagccacttttctagcc 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39895464 agaacttgtgttgtcaatggtaagaacaactttaccaggttcattaattttaaaactgttgcaaagcactgcttcttctgatgaagccacttttctagcc 39895365  T
Q  529 ttttggacaattacagtatagcttccttcattgcttggtacaaattctgcaccatacctt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39895364 ttttggacaattacagtatagcttccttcattgcttggtacaaattctgcaccatacctt 39895305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 39895741 - 39895705
Alignment:
Q  181 gtattcctactatacgaaaaattcaaagataacaaga 217  Q
    |||||||||||||||||||||||||||||||||||||    
T  39895741 gtattcctactatacgaaaaattcaaagataacaaga 39895705  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 7830070 - 7830119
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  7830070 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 7830119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 264 - 494
Target Start/End: Complemental strand, 21220181 - 21219964
Alignment:
Q  264 aatttgaagatcatttggtggtaaaagtggaaacaaagaacataatcaaacaaaacaattttggtctttcaacgttgtacattttcacttgtgcaaacat 363  Q
    |||| |||||| ||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| || ||||||||||            ||||||    
T  21220181 aattagaagattatttggtggtaaaagtggacacga-gaacataatcaaacaaaacaactttggtcttaca-cgttgtacat------------aaacat 21220096  T
Q  364 aatgatttatctcagtcagagagtgaagtcttggtcttcaagcggtacaagagctttttcttcctagaacttg-tgttgtcaatggtaagaacaacttta 462  Q
     ||||||| ||||| ||||||||||||| |||||| || || ||||||||||| ||||||||  ||||||||| |||||||||||||||| |||||||||    
T  21220095 gatgatttttctcaatcagagagtgaagacttggtttttaaacggtacaagaggtttttctttatagaacttggtgttgtcaatggtaagcacaacttta 21219996  T
Q  463 ccaggttcattaattttaaaactgttgcaaag 494  Q
    |||||||||||| |||||||||||||||||||    
T  21219995 ccaggttcattagttttaaaactgttgcaaag 21219964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 387 - 584
Target Start/End: Complemental strand, 44643752 - 44643555
Alignment:
Q  387 tgaagtcttggtcttcaagcggtacaagagctttttcttcctagaacttgtgttgtcaatggtaagaacaactttaccaggttcattaattttaaaactg 486  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||| ||||  ||||||||||| ||||||||||| |||||||||  ||||||  |  ||    
T  44643752 tgaaggcttggtcttcaagcggtacaagagcttcttcttcttagagcttgaattgtcaatggtgagaacaactttcccaggttcaccaattttgtagttg 44643653  T
Q  487 ttgcaaagcactgcttcttctgatgaagccacttttctagccttttggacaattacagtatagcttccttcattgcttggtacaaattctgcaccata 584  Q
    || |||||||||| ||||||||||||||| | |||||||| ||| ||||  || ||||| |||||||||||    ||||||||||| |||||||||||    
T  44643652 ttacaaagcactggttcttctgatgaagcaatttttctagtcttctggattatcacagtgtagcttccttctgaacttggtacaaactctgcaccata 44643555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 37472178 - 37472120
Alignment:
Q  23 tgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  37472178 tgtgtcagaccggcggcccagtcccgccgttacaggtggcgggaacgccactaaaagac 37472120  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 35344208 - 35344266
Alignment:
Q  23 tgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    ||||||||  ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  35344208 tgtgtcagatcggcggcccagtccctccgtttcaggtggcgggaacgccactaaaagac 35344266  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 21174475 - 21174524
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  21174475 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 21174524  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 47097000 - 47097049
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  47097000 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 47097049  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 53142917 - 53142966
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  53142917 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 53142966  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 30891648 - 30891599
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||| |||||    
T  30891648 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactagaagac 30891599  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 30895609 - 30895658
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||| |||||    
T  30895609 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactagaagac 30895658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 47094746 - 47094697
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||||||||    
T  47094746 tccggcggcc-agtcccgccatttcagatggcgggaacgccactaaaagac 47094697  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 49003520 - 49003455
Alignment:
Q  4 ggccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacg 69  Q
    ||||||||||||| |||||  ||| || |||||||| |||||||||||||| || || ||||||||    
T  49003520 ggccagtcatgacgcgacggctgtgagaccggcggcgcagtcccgccgtttcagatgacgggaacg 49003455  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 260 - 494
Target Start/End: Original strand, 9168930 - 9169149
Alignment:
Q  260 gttcaatttgaagatcatttggtggtaaaagtggaaacaaagaacataatcaaacaaaacaattttggtctttcaacgttgtacattttcacttgtgcaa 359  Q
    |||||||| ||||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||||| || || |||||||            ||    
T  9168930 gttcaattagaagatcatttagtggtaaaagtggacacga-gaacataatcaaacaaaacaattttggtcttgca-cgctgtacat------------aa 9169015  T
Q  360 acataatgatttatctcagtcagagagtgaagtcttggtcttcaagcggtacaagagctttttcttcctagaacttg-tgttgtcaatggtaagaacaac 458  Q
    |||| ||||||| ||||||||||||  ||||| |||||| || |||||||||||||| ||||||||  ||||||||| ||||||||||| |||| |||||    
T  9169016 acatgatgatttttctcagtcagag--tgaagacttggtttttaagcggtacaagaggtttttctttatagaacttggtgttgtcaatgataagcacaac 9169113  T
Q  459 tttaccaggttcattaattttaaaactgttgcaaag 494  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9169114 tttaccaggttcactaattttaaaactgttgcaaag 9169149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25057630 - 25057550
Alignment:
Q  1 acgggccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  25057630 acgggccagtcatgacacgacgtgtgtcagaccggcggcccagtcccgccgtttcaggtgacgggaacgccactaaaagac 25057550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 5629478 - 5629527
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  5629478 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 5629527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 38424111 - 38424160
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  38424111 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 38424160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 41555255 - 41555192
Alignment:
Q  6 ccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgc 70  Q
    ||||||||||| |||||  |||||| ||||||||| ||||||||||||| || ||||||||||||    
T  41555255 ccagtcatgacgcgacggttgtcagaccggcggcc-agtcccgccgtttcagatggcgggaacgc 41555192  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 42831030 - 42831085
Alignment:
Q  25 tgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||| ||||||||| |||||||||  || || |||||||||||||||||||||||    
T  42831030 tgtcagaccggcggcc-agtcccgccagttcagatggcgggaacgccactaaaagac 42831085  T

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Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 12946517 - 12946437
Alignment:
Q  1 acgggccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12946517 acgggccagtcatgacacgacgtgtgtcagaccggcggcccagtcccgccgtttcaggtggcgggaacgccactaaaagac 12946437  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 48344356 - 48344307
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  48344356 tccggcggcc-agtcccgccgtttcaggtggcgggaacgccactaaaagac 48344307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 48350689 - 48350738
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  48350689 tccggcggcc-agtcccgccgtttcaggtggcgggaacgccactaaaagac 48350738  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 51149101 - 51149150
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  51149101 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 51149150  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 48826805 - 48826765
Alignment:
Q  41 cagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  48826805 cagtcctgccgtttcaggtggcgggaacgccactaaaagac 48826765  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8550329 - 8550409
Alignment:
Q  1 acgggccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  8550329 acgggccagtcatgacacgacgtgtgtcagaccggcggcccagtcccgtcgtttcaggtggcgagaacgccactaaaagac 8550409  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 32342103 - 32342045
Alignment:
Q  23 tgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  32342103 tgtgtcagaccggcggcccagtcccgtcgtttcaggtggcgggaacgccactaaaagac 32342045  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 35998210 - 35998259
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  35998210 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 35998259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 38035801 - 38035752
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  38035801 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 38035752  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 32869374 - 32869423
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| |||||||||||||| |||||||||||    
T  32869374 tccggcggcc-agtcccgccatttcaggtggcgggaacgtcactaaaagac 32869423  T

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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28348987 - 28349067
Alignment:
Q  1 acgggccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||  |||||| ||||||||||||||||  ||||||||    
T  28348987 acgggccagtcatgacacgacgtgtgtcagaccgacggcccagtccttccgtttcaggtggcgggaacgcccgtaaaagac 28349067  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 26405715 - 26405781
Alignment:
Q  4 ggccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgc 70  Q
    ||||||||||||| |||||  |||||| || ||||||||||||| |||||| || || |||||||||    
T  26405715 ggccagtcatgacgcgacggctgtcagaccagcggcccagtccccccgtttcagatgacgggaacgc 26405781  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 43655429 - 43655493
Alignment:
Q  4 ggccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacg 69  Q
    ||||| ||||||| |||||  |||||| ||||||||| ||||||||||||| || |||||||||||    
T  43655429 ggccaatcatgacgcgacgactgtcagaccggcggcc-agtcccgccgtttcagatggcgggaacg 43655493  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 28346656 - 28346593
Alignment:
Q  6 ccagtcatgacacgacgtgtgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgc 70  Q
    ||||||||||| |||||  |||||| ||||||||| ||||||||| ||| || ||||||||||||    
T  28346656 ccagtcatgacgcgacggctgtcagaccggcggcc-agtcccgccatttcagatggcgggaacgc 28346593  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 20822076 - 20822114
Alignment:
Q  43 gtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  20822076 gtcccgccgtttcaggtggcgggaacgccactaaaagac 20822114  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 32696110 - 32696061
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  32696110 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 32696061  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 168360 - 168311
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||| |||||    
T  168360 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactagaagac 168311  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 43725259 - 43725308
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  43725259 tccggcggcc-agtcccgccatttcaggtggcgggaacgccactaaaagac 43725308  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 45048254 - 45048199
Alignment:
Q  25 tgtcagtccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||| ||||||||| | ||||||| ||| ||||||||||||||||||||||||||    
T  45048254 tgtcagaccggcggccaa-tcccgccatttcaggtggcgggaacgccactaaaagac 45048199  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 17509488 - 17509537
Alignment:
Q  31 tccggcggcccagtcccgccgtttaaggtggcgggaacgccactaaaagac 81  Q
    |||||||||| | ||||||| ||| ||||||||||||||||||||||||||    
T  17509488 tccggcggccaa-tcccgccatttcaggtggcgggaacgccactaaaagac 17509537  T

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