View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18898_low_1 (Length: 773)

Name: NF18898_low_1
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18898_low_1
NF18898_low_1
[»] chr3 (14 HSPs)
chr3 (5-701)||(5447925-5448616)
chr3 (57-168)||(5456535-5456646)
chr3 (722-759)||(5448640-5448677)
chr3 (84-126)||(5847486-5847528)
chr3 (634-668)||(34610737-34610771)
chr3 (630-667)||(18405763-18405800)
chr3 (641-671)||(22667515-22667545)
chr3 (641-671)||(22724154-22724184)
chr3 (630-668)||(25447176-25447214)
chr3 (635-668)||(16072972-16073005)
chr3 (638-671)||(20170642-20170675)
chr3 (630-671)||(24085266-24085307)
chr3 (630-671)||(31365116-31365157)
chr3 (607-671)||(39980806-39980871)
[»] chr6 (6 HSPs)
chr6 (630-671)||(35069540-35069581)
chr6 (604-671)||(10645313-10645381)
chr6 (637-671)||(4163261-4163295)
chr6 (637-671)||(4224882-4224916)
chr6 (631-669)||(34430404-34430442)
chr6 (635-668)||(21405085-21405118)
[»] chr1 (13 HSPs)
chr1 (630-668)||(15784418-15784456)
chr1 (630-668)||(33204325-33204363)
chr1 (630-671)||(2295197-2295238)
chr1 (639-671)||(41505784-41505816)
chr1 (616-671)||(13810085-13810140)
chr1 (637-671)||(2295299-2295333)
chr1 (641-671)||(28837281-28837311)
chr1 (616-670)||(29904838-29904892)
chr1 (630-668)||(38116008-38116046)
chr1 (638-671)||(14385721-14385754)
chr1 (638-671)||(37842284-37842317)
chr1 (635-668)||(39976141-39976174)
chr1 (604-668)||(50644186-50644251)
[»] chr8 (8 HSPs)
chr8 (630-671)||(1058005-1058046)
chr8 (638-671)||(30251382-30251415)
chr8 (635-668)||(38602433-38602466)
chr8 (630-671)||(43717862-43717903)
chr8 (616-668)||(35534544-35534596)
chr8 (630-669)||(9130249-9130288)
chr8 (630-671)||(36963282-36963323)
chr8 (630-671)||(38648452-38648493)
[»] chr7 (4 HSPs)
chr7 (635-668)||(19302494-19302527)
chr7 (641-671)||(11619086-11619116)
chr7 (630-667)||(18765385-18765422)
chr7 (635-668)||(33266417-33266450)
[»] chr5 (8 HSPs)
chr5 (630-671)||(15015944-15015985)
chr5 (630-668)||(9202679-9202717)
chr5 (635-669)||(10640059-10640093)
chr5 (630-668)||(12425674-12425712)
chr5 (637-667)||(15246941-15246971)
chr5 (630-668)||(35445775-35445813)
chr5 (627-668)||(4625827-4625868)
chr5 (635-668)||(39594913-39594946)
[»] chr4 (8 HSPs)
chr4 (635-668)||(27043761-27043794)
chr4 (630-671)||(54426144-54426185)
chr4 (630-668)||(15173234-15173272)
chr4 (630-668)||(17822796-17822834)
chr4 (630-671)||(8705042-8705083)
chr4 (631-668)||(29388716-29388753)
chr4 (635-668)||(42403954-42403987)
chr4 (630-671)||(44797981-44798022)
[»] chr2 (12 HSPs)
chr2 (630-671)||(3312178-3312219)
chr2 (604-668)||(27317453-27317518)
chr2 (635-671)||(15305780-15305816)
chr2 (628-668)||(18179048-18179088)
chr2 (630-668)||(29628673-29628711)
chr2 (630-668)||(30331852-30331890)
chr2 (630-667)||(1626001-1626038)
chr2 (630-671)||(7928226-7928267)
chr2 (642-671)||(40837365-40837394)
chr2 (630-671)||(42659139-42659180)
chr2 (267-316)||(43036515-43036564)
chr2 (607-671)||(44590101-44590166)


Alignment Details
Target: chr3 (Bit Score: 606; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 5 - 701
Target Start/End: Original strand, 5447925 - 5448616
Alignment:
Q  5 gactgagatgaaagggaaaaggagggaccaaaaccaaaactatcaatgttgcaaattgacaattaccatcagcaccttatggttctccattgtgtttgtg 104  Q
    |||||| |||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5447925 gactgaaatgaaagggaaaaggagggacca------aaactatcaatgttgcaaattgacaattaccatcagcaccttatggttctccattgtgtttgtg 5448018  T
Q  105 tgggttttccctgctttctactttctaatatcatgttaattttttacctggcttaccaagcttcctctaaaacctttcacttgcccatttttggcttgcg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5448019 tgggttttccctgctttctactttctaatatcatgttaattttttacctggcttaccaagcttcctctaaaacctttcacttgcccatttttggcttgtg 5448118  T
Q  205 accatccctatccgtcattgaaaacattgtttacttcaaatagaattaagacaagtcatggctggataaacaacttatatgcagcctatagcataataac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5448119 accatccctatccgtcattgaaaacattgtttacttcaaatagaattaagacaagtcatggttggataaacaacttatatgcagcctatagcataataac 5448218  T
Q  305 ttatgtataagccnnnnnnngtgcacaattcaatatttgacctgaagactgaccaatccgggagaccaatcccaccttccactagccgagggcccagtta 404  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5448219 ttatgtataagcctttttttgtgcacaattcaatatttgacctgaagactgactaatccgggagaccaatcccaccttccactagccgagggcccagtta 5448318  T
Q  405 aagttagaacaatgttttgtatgaacttacccaacacaagaatttcttggcgcccgagggatttaaacctaagagcaaaagaggagcatactccaggtcc 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5448319 aagttagaacaatgttttgtatgaacttacccaacacaagaatttcttggcgcccgagggatttaaacctaagagcaaaagaggagcatactccaggtca 5448418  T
Q  505 caaaccaacaccatcagctcaatcaggggttatttccatagtaaaagataaaataaag-ttttttgtatagttataagttgtcttcataagcgaaaacat 603  Q
    ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5448419 caaaccaacaccatcaggtcaactaggggttatttctatagtaaaagataaaataaagtttttttgtatagttataagttgtcttcataagcgaaaacat 5448518  T
Q  604 agttgttttcatagttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagccacttcttgtccatatgaaaatgatgtaaggt 701  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5448519 agttgttttcatagttctctaatacagtcttacaaaacttatgtcagtagataagctcaaataagccacttcttgtccatatgaaaatgatgtaaggt 5448616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 5456535 - 5456646
Alignment:
Q  57 aaattgacaattaccatcagcaccttatggttctccattgtgtttgtgtgggttttccctgctttctactttctaatatcatgttaattttttacctggc 156  Q
    ||||||||||||||||| || | ||||| ||||| |||||||||||||||||||||| |||||| ||||||| || |||||| || |||||| |  || |    
T  5456535 aaattgacaattaccattaggagcttatagttcttcattgtgtttgtgtgggttttctctgcttactactttttagtatcatattcatttttcaattgtc 5456634  T
Q  157 ttaccaagcttc 168  Q
    ||||||||||||    
T  5456635 ttaccaagcttc 5456646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 722 - 759
Target Start/End: Original strand, 5448640 - 5448677
Alignment:
Q  722 gaagaagcatgtgatatagtacaaattaaagtcttatt 759  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5448640 gaagaagcatgtgatatagtacaaattaaagtcttatt 5448677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 5847528 - 5847486
Alignment:
Q  84 tggttctccattgtgtttgtgtgggttttccctgctttctact 126  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  5847528 tggttctccattgtgtttgtgtgggttttccatgcttactact 5847486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 668
Target Start/End: Complemental strand, 34610771 - 34610737
Alignment:
Q  634 tacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||||||||||||||||||||||||||||||||    
T  34610771 tacaaaacttatgtcagtagataagctcaaataag 34610737  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 667
Target Start/End: Complemental strand, 18405800 - 18405763
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataa 667  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18405800 gtctcacaaaacttatgtcagtagataagctcaaataa 18405763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 671
Target Start/End: Original strand, 22667515 - 22667545
Alignment:
Q  641 cttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||||||||||||||||||||||||    
T  22667515 cttatgtcagtagataagctcaaataagcca 22667545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 671
Target Start/End: Original strand, 22724154 - 22724184
Alignment:
Q  641 cttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||||||||||||||||||||||||    
T  22724154 cttatgtcagtagataagctcaaataagcca 22724184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 25447214 - 25447176
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  25447214 gtctcacaaaacttatgtcagtagataaactcaaataag 25447176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 16073005 - 16072972
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||| ||||||||||||||||||    
T  16073005 acaaaacttatgtcattagataagctcaaataag 16072972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 671
Target Start/End: Complemental strand, 20170675 - 20170642
Alignment:
Q  638 aaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||||| |||||||||||||||||||||    
T  20170675 aaacttatgtcactagataagctcaaataagcca 20170642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 24085307 - 24085266
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||||| | ||||||||||||||||||||||    
T  24085307 gtctcacaaaacttatgccggtagataagctcaaataagcca 24085266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 31365157 - 31365116
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  31365157 gtctcacaaaacttatgccaatagataagctcaaataagcca 31365116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 671
Target Start/End: Original strand, 39980806 - 39980871
Alignment:
Q  607 tgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||| ||||||| | || |||| ||||||||||||  |||||||||||||||| ||||||    
T  39980806 tgttttcataagttctcttaaacagtctcacaaaacttatgctagtagataagctcaaacaagcca 39980871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 35069581 - 35069540
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35069581 gtcttacaaaacttatgtcagtagataagctcaaataagcca 35069540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 671
Target Start/End: Complemental strand, 10645381 - 10645313
Alignment:
Q  604 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    ||||||||||||| ||||||  | || |||||||||||||||||||| ||||||| ||||||| |||||    
T  10645381 agttgttttcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagcca 10645313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 671
Target Start/End: Original strand, 4163261 - 4163295
Alignment:
Q  637 aaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||| ||||||||||||||||||||||||    
T  4163261 aaaacttatgccagtagataagctcaaataagcca 4163295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 671
Target Start/End: Original strand, 4224882 - 4224916
Alignment:
Q  637 aaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||| ||||||||||||||||||||||||    
T  4224882 aaaacttatgccagtagataagctcaaataagcca 4224916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 669
Target Start/End: Complemental strand, 34430442 - 34430404
Alignment:
Q  631 tcttacaaaacttatgtcagtagataagctcaaataagc 669  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  34430442 tcttataaaacttatgtcactagataagctcaaataagc 34430404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 21405118 - 21405085
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||||||||||||||| |||||||||||||||    
T  21405118 acaaaacttatgtcagtatataagctcaaataag 21405085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 668
Target Start/End: Original strand, 15784418 - 15784456
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  15784418 gtcttacaaaacttatgttagtagataagctcaaataag 15784456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 33204363 - 33204325
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33204363 gtctcacaaaacttatgtcagtagataagctcaaataag 33204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 2295197 - 2295238
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  2295197 gtctcacaaaacttatgccagtagataagctcaaataagcca 2295238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 671
Target Start/End: Original strand, 41505784 - 41505816
Alignment:
Q  639 aacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||||||||||||||||||||||||||    
T  41505784 aacttatgtcagtagataagctcaaataagcca 41505816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 671
Target Start/End: Original strand, 13810085 - 13810140
Alignment:
Q  616 agttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||| |  |||| |||||||||| |||||||||||||| |||||||||||    
T  13810085 agttctctaaaagagtctcacaaaacttacgtcagtagataagcacaaataagcca 13810140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 671
Target Start/End: Original strand, 2295299 - 2295333
Alignment:
Q  637 aaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||| ||||||||||||||||||||||||||    
T  2295299 aaaacttaagtcagtagataagctcaaataagcca 2295333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 671
Target Start/End: Complemental strand, 28837311 - 28837281
Alignment:
Q  641 cttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||||||||||||||||||||||||    
T  28837311 cttatgtcagtagataagctcaaataagcca 28837281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 670
Target Start/End: Original strand, 29904838 - 29904892
Alignment:
Q  616 agttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcc 670  Q
    |||||||| | || |||| ||||||||||||  ||||||||||||||||||||||    
T  29904838 agttctctcaaacagtctcacaaaacttatgcaagtagataagctcaaataagcc 29904892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 38116046 - 38116008
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  38116046 gtctcacaaaacttacgtcagtagataagctcaaataag 38116008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 671
Target Start/End: Complemental strand, 14385754 - 14385721
Alignment:
Q  638 aaacttatgtcagtagataagctcaaataagcca 671  Q
    ||||||||| ||||||||||||||||||||||||    
T  14385754 aaacttatgccagtagataagctcaaataagcca 14385721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 671
Target Start/End: Complemental strand, 37842317 - 37842284
Alignment:
Q  638 aaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||| |||||||||||||||||||||||||    
T  37842317 aaacttatatcagtagataagctcaaataagcca 37842284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 39976174 - 39976141
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||||||||||| ||||||||||    
T  39976174 acaaaacttatgtcagtagataatctcaaataag 39976141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 668
Target Start/End: Complemental strand, 50644251 - 50644186
Alignment:
Q  604 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||| ||||||  | || |||| ||||||| ||||| ||||||||||||||||||||    
T  50644251 agttgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataag 50644186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 1058046 - 1058005
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  1058046 gtctcacaaaacttatgtaagtagataagctcaaataagcca 1058005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 671
Target Start/End: Complemental strand, 30251415 - 30251382
Alignment:
Q  638 aaacttatgtcagtagataagctcaaataagcca 671  Q
    ||||||||||||||||||||||||||||||||||    
T  30251415 aaacttatgtcagtagataagctcaaataagcca 30251382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 668
Target Start/End: Original strand, 38602433 - 38602466
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||||||||||||||||||||||    
T  38602433 acaaaacttatgtcagtagataagctcaaataag 38602466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 43717903 - 43717862
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  43717903 gtctcacaaaacttatgtcaatagataagctcaaataagcca 43717862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 35534596 - 35534544
Alignment:
Q  616 agttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||||| | || |||| ||||||||||||| ||||||||||||||||||||    
T  35534596 agttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataag 35534544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 669
Target Start/End: Complemental strand, 9130288 - 9130249
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagc 669  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  9130288 gtctcacaaaacttatgccagtagataagctcaaataagc 9130249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 36963323 - 36963282
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  36963323 gtctcacaaaacttatgccagtagattagctcaaataagcca 36963282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 38648452 - 38648493
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| ||||||||||||||||||||||| || ||||||||||    
T  38648452 gtctcacaaaacttatgtcagtagataatcttaaataagcca 38648493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 19302527 - 19302494
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||||||||||||||||||||||    
T  19302527 acaaaacttatgtcagtagataagctcaaataag 19302494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 671
Target Start/End: Complemental strand, 11619116 - 11619086
Alignment:
Q  641 cttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||||||||||||||||||||||||    
T  11619116 cttatgtcagtagataagctcaaataagcca 11619086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 667
Target Start/End: Original strand, 18765385 - 18765422
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataa 667  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  18765385 gtctcacaaaacttatgtcaatagataagctcaaataa 18765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 33266450 - 33266417
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||||||||||| |||||||||||||||||||    
T  33266450 acaaaacttatgtcggtagataagctcaaataag 33266417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 15015944 - 15015985
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  15015944 gtctcacaaagcttatgtcagtagataagctcaaataagcca 15015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 9202717 - 9202679
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  9202717 gtcttacaaaacttatgccaggagataagctcaaataag 9202679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 635 - 669
Target Start/End: Original strand, 10640059 - 10640093
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataagc 669  Q
    ||||||||||||||||||||||| |||||||||||    
T  10640059 acaaaacttatgtcagtagataaactcaaataagc 10640093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Original strand, 12425674 - 12425712
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  12425674 gtctcacaaaacttatgacagtagataagctcaaataag 12425712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 667
Target Start/End: Original strand, 15246941 - 15246971
Alignment:
Q  637 aaaacttatgtcagtagataagctcaaataa 667  Q
    |||||||||||||||||||||||||||||||    
T  15246941 aaaacttatgtcagtagataagctcaaataa 15246971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 35445813 - 35445775
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  35445813 gtctcacaaaacttatgtcagtagataaactcaaataag 35445775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 668
Target Start/End: Original strand, 4625827 - 4625868
Alignment:
Q  627 acggtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  4625827 acggtcctacaaaacttatttccgtagataagctcaaataag 4625868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 668
Target Start/End: Original strand, 39594913 - 39594946
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||||||||||| |||||||||||||||||||    
T  39594913 acaaaacttatgtcggtagataagctcaaataag 39594946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 27043794 - 27043761
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||||||||||||||||||||||    
T  27043794 acaaaacttatgtcagtagataagctcaaataag 27043761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 54426144 - 54426185
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  54426144 gtctcacaaaacttatgccagtagataagctcaaataagcca 54426185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 15173272 - 15173234
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  15173272 gtctcacaaaacttatgtcagtagataagttcaaataag 15173234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 17822834 - 17822796
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  17822834 gtctcacagaacttatgtcagtagataagctcaaataag 17822796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 8705042 - 8705083
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  8705042 gtctcacaaaacttatgtcaatagataagctcaaatgagcca 8705083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 668
Target Start/End: Original strand, 29388716 - 29388753
Alignment:
Q  631 tcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  29388716 tcttacaaaacttatgttagtagataaggtcaaataag 29388753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 668
Target Start/End: Complemental strand, 42403987 - 42403954
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||||||| ||||||||||||||||    
T  42403987 acaaaacttatgtcagttgataagctcaaataag 42403954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 44797981 - 44798022
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||||||||||||||||||| |||| |||||    
T  44797981 gtctcacaaaacttatgtcagtagataagcttaaatcagcca 44798022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 630 - 671
Target Start/End: Original strand, 3312178 - 3312219
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  3312178 gtctcacaaaacttacgtcagtagataagctcaaataagcca 3312219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 668
Target Start/End: Original strand, 27317453 - 27317518
Alignment:
Q  604 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    ||||||||||||| ||||||| | || |||| | |||||||||||| |||||||||||||||||||    
T  27317453 agttgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataag 27317518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 671
Target Start/End: Original strand, 15305780 - 15305816
Alignment:
Q  635 acaaaacttatgtcagtagataagctcaaataagcca 671  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15305780 acaaaacttatgtcaatagataagctcaaataagcca 15305816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 668
Target Start/End: Original strand, 18179048 - 18179088
Alignment:
Q  628 cggtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  18179048 cggtctcacaaaacttatgttagtagataagctcaaataag 18179088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Complemental strand, 29628711 - 29628673
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  29628711 gtctcacaaaacttatgacagtagataagctcaaataag 29628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 630 - 668
Target Start/End: Original strand, 30331852 - 30331890
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataag 668  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  30331852 gtctcacaaaacttatgtcagtagataagctgaaataag 30331890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 667
Target Start/End: Original strand, 1626001 - 1626038
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataa 667  Q
    |||||||||||||||||||||  |||||||||||||||    
T  1626001 gtcttacaaaacttatgtcaggggataagctcaaataa 1626038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 7928267 - 7928226
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| ||| ||||||||||| |||||||||||||||||||||    
T  7928267 gtctcacacaacttatgtcaatagataagctcaaataagcca 7928226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 671
Target Start/End: Complemental strand, 40837394 - 40837365
Alignment:
Q  642 ttatgtcagtagataagctcaaataagcca 671  Q
    ||||||||||||||||||||||||||||||    
T  40837394 ttatgtcagtagataagctcaaataagcca 40837365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 42659180 - 42659139
Alignment:
Q  630 gtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||| |||||||||||| ||||| ||||||||||||||||||    
T  42659180 gtctcacaaaacttatgccagtaaataagctcaaataagcca 42659139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 43036515 - 43036564
Alignment:
Q  267 tggataaacaacttatatgcagcctatagcataataacttatgtataagc 316  Q
    |||||||||||||||| ||| || ||||||||||  ||||||||||||||    
T  43036515 tggataaacaacttatttgccgcttatagcataaccacttatgtataagc 43036564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 671
Target Start/End: Original strand, 44590101 - 44590166
Alignment:
Q  607 tgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 671  Q
    |||||||||| ||||| | | ||||||| ||||||||||||||  ||||||| |||||||||||||    
T  44590101 tgttttcataagttctttcaaacggtctcacaaaacttatgtctatagataaactcaaataagcca 44590166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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