View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18898_low_10 (Length: 388)

Name: NF18898_low_10
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18898_low_10
NF18898_low_10
[»] chr1 (13 HSPs)
chr1 (5-373)||(6523402-6523770)
chr1 (175-371)||(47713254-47713450)
chr1 (83-244)||(47777796-47777957)
chr1 (173-370)||(47718049-47718246)
chr1 (175-281)||(47745927-47746033)
chr1 (324-371)||(47760169-47760216)
chr1 (124-278)||(6507062-6507216)
chr1 (124-278)||(6512963-6513117)
chr1 (322-368)||(47778035-47778081)
chr1 (178-238)||(6500273-6500333)
chr1 (124-272)||(6517368-6517516)
chr1 (324-371)||(47745837-47745884)
chr1 (173-281)||(47760259-47760367)
[»] scaffold0341 (2 HSPs)
scaffold0341 (124-278)||(1087-1241)
scaffold0341 (124-278)||(8741-8895)


Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 6523402 - 6523770
Alignment:
Q  5 tagattattctcattattcaatctttctcctaataataattttttcatcatcacagttagccaaagccgataacacaacacaaaacttccactatttctg 104  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6523402 tagattcttttcattattcaatctttctcctaataataattttttcatcatcacagttagccaaagctgataacacaacacaaaacttccactatttctg 6523501  T
Q  105 taatcctaacaacgtaaccggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaac 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523502 taatcctaacaacgtaactggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaac 6523601  T
Q  205 tatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaagacaaacgagtgtcttagttgcc 304  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523602 tacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaagacaaacgagtgtcttagttgcc 6523701  T
Q  305 tcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatgaag 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523702 tcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatgaag 6523770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 371
Target Start/End: Complemental strand, 47713450 - 47713254
Alignment:
Q  175 tccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg 274  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||  | ||  |||||||  ||||||||||||| ||||| || |||||||| |    
T  47713450 tccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggag 47713351  T
Q  275 atgttaagacaaacgagtgtcttagttgcctcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga 371  Q
    |||||||  |  | |  || |  ||| | ||||||| ||||||      ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  47713350 atgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatga 47713254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 244
Target Start/End: Original strand, 47777796 - 47777957
Alignment:
Q  83 cacaaaacttccactatttctgtaatcctaacaacgtaaccggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactct 182  Q
    ||||||||||||||||||||||| |||  | |||||  |  |||| ||||||| | ||||| | |||| |||||||||| ||  ||||| | ||||||||    
T  47777796 cacaaaacttccactatttctgtgatcacagcaacgagagaggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactct 47777895  T
Q  183 cacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaaca 244  Q
    || ||||||||| |||||||| || ||||||||||||||||||  ||| ||||||| |||||    
T  47777896 catttccaacacacaaatcaattacggtttctacaatttctcattcggcgaaaacataaaca 47777957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 370
Target Start/End: Complemental strand, 47718246 - 47718049
Alignment:
Q  173 tgtccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagagg 272  Q
    |||||| ||| |||||||||||  |||||||||| |||||||||||||||||  | ||  |||||||  |||||||||||||  |||| || ||||||||    
T  47718246 tgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagagg 47718147  T
Q  273 cgatgttaagacaaacgagtgtcttagttgcctcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatg 370  Q
     ||||||||  |  |||  || |  ||||| ||||||| ||||||      ||||||| | ||||||||||||||||||||||| |||||||||||||    
T  47718146 agatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatg 47718049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 47746033 - 47745927
Alignment:
Q  175 tccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg 274  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||  | ||  |||||||  | ||||||||||| ||||| || |||||||| |    
T  47746033 tccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattggactctgcagaggag 47745934  T
Q  275 atgttaa 281  Q
    |||||||    
T  47745933 atgttaa 47745927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 47760216 - 47760169
Alignment:
Q  324 tctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga 371  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  47760216 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatga 47760169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 6507216 - 6507062
Alignment:
Q  124 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 223  Q
    |||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| |||||||||||||||||||   | || ||||| |||||||| |||| ||    
T  6507216 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 6507117  T
Q  224 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 278  Q
    |  | || | ||||||  ||||||||||||| ||||| || || ||||| |||||    
T  6507116 cttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 6507062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 6513117 - 6512963
Alignment:
Q  124 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 223  Q
    |||| ||||||| ||||||| | ||| || | |||||||||  | ||||| |||||||||||||||||||   | |||||||| |||||||| |||| ||    
T  6513117 ggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcct 6513018  T
Q  224 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 278  Q
    |  | ||   ||||||  ||||||||||||| ||||| ||||| ||||| |||||    
T  6513017 cttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgt 6512963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 47778035 - 47778081
Alignment:
Q  322 aatctcacacagctttgtccaaaccaaaaagaagcaattggttggta 368  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||    
T  47778035 aatctcacacaactttgtccaaacaaaaaggaagcaattggttggta 47778081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 6500333 - 6500273
Alignment:
Q  178 actctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaaca 238  Q
    |||||||||||||||||  |||||||||| |||||||||||||| ||| | || |||||||    
T  6500333 actctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaaca 6500273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 272
Target Start/End: Complemental strand, 6517516 - 6517368
Alignment:
Q  124 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 223  Q
    |||| ||||||| ||||||| | |||||| |||||||||||  | ||| | |||| ||||||||||||||   |||||||||| |||||||| || | ||    
T  6517516 ggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataactcct 6517417  T
Q  224 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagagg 272  Q
    |  | ||   |||||   ||||||||||||||||||| || ||||||||    
T  6517416 cttatggcataaacagcgacaaagtaaacgcaattggactatgcagagg 6517368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 47745884 - 47745837
Alignment:
Q  324 tctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga 371  Q
    ||||||| | |||||||||| |||||||||||||||| ||||||||||    
T  47745884 tctcacaaaactttgtccaacccaaaaagaagcaattagttggtatga 47745837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 47760367 - 47760259
Alignment:
Q  173 tgtccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagagg 272  Q
    |||||| ||| ||||||||| |  |||||||||| |||||||||||| | ||  | ||  |||||||  ||||||||||||| ||||| || || |||||    
T  47760367 tgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagagg 47760268  T
Q  273 cgatgttaa 281  Q
     ||||||||    
T  47760267 agatgttaa 47760259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 1241 - 1087
Alignment:
Q  124 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 223  Q
    |||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| |||||||||||||||||||   | || ||||| |||||||| |||| ||    
T  1241 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 1142  T
Q  224 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 278  Q
    |  | || | ||||||  ||||||||||||| ||||| || || ||||| |||||    
T  1141 cttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 8895 - 8741
Alignment:
Q  124 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 223  Q
    |||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| |||||||||||||||||||   | || ||||| |||||||| |||| ||    
T  8895 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 8796  T
Q  224 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 278  Q
    |  | || | ||||||  ||||||||||||| ||||| || || ||||| |||||    
T  8795 cttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 8741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University