View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18898_low_12 (Length: 373)
Name: NF18898_low_12
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 32346603 - 32346264
Alignment:
| Q |
12 |
agatgaaactgtgagacacttgattcgtcataaactttatcatatgtttaataaatatcttggacatatgcttgtttaccaatatattagatgcnnnnnn |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32346603 |
agatggaactgtgagacacttgattcgtcataaactctatcatatgtttaataaatatcttggacatatgcttgtttaccaatatgttagatgctttttt |
32346504 |
T |
|
| Q |
112 |
ngtagtaccgaagattagagctacggataatgctttcattcactatgctttacagagctgattctttgacaagatgaatgcttctaaatttactttttct |
211 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32346503 |
tgtagtaccgaagattagagctacagataatgctttcattcactatgctttccagagctgattctttgacaagatgaatgcttctaaatttacttttcct |
32346404 |
T |
|
| Q |
212 |
aactaattttgtatgctgactagaattgattatatagtgtcttttacttcttgttgtgttctactagctggataaagatgattattgacgttatctaatt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32346403 |
aactaattttgtatgctgactagaattgattatatagtgtcttttacttcttgttgtgttctactagctggataaagatgattattgacgttatctaatt |
32346304 |
T |
|
| Q |
312 |
agtacttatgtcttacgcacttgaacacacatttcataga |
351 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
32346303 |
agtacttaggtcttacgcacttgaacacacattttataga |
32346264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University