View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_low_14 (Length: 345)
Name: NF18898_low_14
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 68 - 342
Target Start/End: Original strand, 52630570 - 52630844
Alignment:
| Q |
68 |
gtttgaccaccaatcccagcattagagagagtgccaccaacagtcaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgact |
167 |
Q |
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||||| |||| ||| ||| ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52630570 |
gtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgcct |
52630669 |
T |
|
| Q |
168 |
tcagaacatgtatccataattcaccaccccaaacatccacatacatttctttctcccaaattagaggacccttaattcctacacctccttttcccatttc |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52630670 |
tcagaacatgtatccataattcaccaccccaaacatccacatacatttctttctcccaaactagaggacccttaattcctacacctccttttcccatttc |
52630769 |
T |
|
| Q |
268 |
aatcaccactcctttcatccctgtatctgcttgtccgtttattgagtgtccgtgtcctctcgctgacaccgcaaa |
342 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52630770 |
aatcaccactcctttcatccttgtatccgcttgtccgtttattgagtgtccgtgtcctctcgctgacaccgcaaa |
52630844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 17243560 - 17243437
Alignment:
| Q |
12 |
aacctgtgataacatccaattcaagaacattggagatttgtggtccaaatctaaaagtttgaccaccaatcccagcattagagagagtgccaccaacagt |
111 |
Q |
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| T |
17243560 |
aacctgtaataacatccaattcaagaacattggagatttgtggtccaaatctaaaagtttggcccccaattccagcattagagagagtgccaccaacaga |
17243461 |
T |
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| Q |
112 |
caaatacaagtaatcagtccaaga |
135 |
Q |
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| T |
17243460 |
caaatacaagtaatcagtccaaga |
17243437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 52454528 - 52454641
Alignment:
| Q |
22 |
aacatccaattcaagaacattggagatttgtggtccaaatctaaaagtttgaccaccaatcccagcattagagagagtgccaccaacagtcaaatacaag |
121 |
Q |
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||||||||||||| |||||||||| ||||| || ||||||| || ||||| |||| ||| ||||||||||||||||| |||||||| | |||||||| |
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| T |
52454528 |
aacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaa |
52454627 |
T |
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| Q |
122 |
taatcagtccaaga |
135 |
Q |
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|||||||||||||| |
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| T |
52454628 |
taatcagtccaaga |
52454641 |
T |
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