View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18898_low_18 (Length: 306)

Name: NF18898_low_18
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18898_low_18
NF18898_low_18
[»] chr3 (3 HSPs)
chr3 (20-116)||(30838-30934)
chr3 (196-294)||(31014-31110)
chr3 (28-98)||(13800007-13800077)
[»] chr5 (2 HSPs)
chr5 (27-98)||(6462366-6462437)
chr5 (28-98)||(17259486-17259556)
[»] chr7 (1 HSPs)
chr7 (27-77)||(34838433-34838483)
[»] chr6 (1 HSPs)
chr6 (65-98)||(2046144-2046177)
[»] chr2 (2 HSPs)
chr2 (20-58)||(12359870-12359908)
chr2 (40-98)||(27679120-27679178)
[»] chr1 (1 HSPs)
chr1 (30-100)||(38785800-38785870)
[»] chr8 (1 HSPs)
chr8 (42-98)||(24523798-24523855)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 30838 - 30934
Alignment:
Q  20 tataacagtttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttactcttagtaactttaattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  30838 tataacagtttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattatttatctcaattttactattagtaactttaattg 30934  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 31014 - 31110
Alignment:
Q  196 aaatactactaattcatcaactaactaattaatcgatataagttgtccactacacgttcatccactatataagttagtttgttaactattcgctatttt 294  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31014 aaatactacaaattcatcaactaactaattaatcgatataagttgtccactacacgttcatccac--tataagttagtttgttaactattcgctatttt 31110  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 13800077 - 13800007
Alignment:
Q  28 tttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 98  Q
    ||||| |||| ||||||||||||| ||| | | |||||||||||| |||||| | || |||||||||||||    
T  13800077 tttttcataagttaattcaagtaggttacagagtaaagtttatagcttatcactttttatctcaattttac 13800007  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 6462437 - 6462366
Alignment:
Q  27 gtttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 98  Q
    |||||||||||  |||||||||||| |||||  |||||| |||||| ||||||||||| |||||||||||||    
T  6462437 gtttttgataagctaattcaagtagcttatatcttaaagcttatagcttatcattatttatctcaattttac 6462366  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 17259486 - 17259556
Alignment:
Q  28 tttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 98  Q
    ||||| |||| ||||||||||||| |||||  ||||||||||||  |||||||| |||||||||| |||||    
T  17259486 ttttttataagttaattcaagtagattatagcttaaagtttataacttatcatttttcatctcaaatttac 17259556  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 34838483 - 34838433
Alignment:
Q  27 gtttttgataaattaattcaagtagtttataaattaaagtttatagtttat 77  Q
    |||||||||||||||||||||||||||| ||| | ||||||||||| ||||    
T  34838483 gtttttgataaattaattcaagtagtttgtaactaaaagtttatagcttat 34838433  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 2046177 - 2046144
Alignment:
Q  65 gtttatagtttatcattattcatctcaattttac 98  Q
    ||||||||||||||||||||||||||||||||||    
T  2046177 gtttatagtttatcattattcatctcaattttac 2046144  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 12359908 - 12359870
Alignment:
Q  20 tataacagtttttgataaattaattcaagtagtttataa 58  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  12359908 tataacattttttgataagttaattcaagtagtttataa 12359870  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 27679120 - 27679178
Alignment:
Q  40 taattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 98  Q
    |||||||||||| ||||   |||||| |||||| ||||||||||| |||||||||||||    
T  27679120 taattcaagtagcttatggcttaaagcttatagcttatcattatttatctcaattttac 27679178  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 38785800 - 38785870
Alignment:
Q  30 tttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttactc 100  Q
    ||||||||  |||||||| ||| |||||| ||||||||| || ||||||||| | | ||||||||||||||    
T  38785800 tttgataagctaattcaaatagcttataacttaaagtttgtaatttatcattttgcctctcaattttactc 38785870  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 24523855 - 24523798
Alignment:
Q  42 attcaagtagtttataaattaaagtttatagtttatcatt-attcatctcaattttac 98  Q
    |||||||||| |||||  |||||||||||||||||||||| ||| ||||||| |||||    
T  24523855 attcaagtagcttatagcttaaagtttatagtttatcattaatttatctcaagtttac 24523798  T

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