View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_low_19 (Length: 301)
Name: NF18898_low_19
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 33120965 - 33120683
Alignment:
| Q |
16 |
tcaagccatcaccgagcttaatagtttggtgaaaatcacgttgcaagtgattgaatttatacttgaattggattaccttaatgataggtatgacacaaag |
115 |
Q |
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| T |
33120965 |
tcaagctatcaccgagcttaatagtttggtgaaaatcacgttgcaagtgattgaatttatacttgaattggattaccttaatgataggtatgacacaaag |
33120866 |
T |
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| Q |
116 |
gttgttcctgctttggaacttgcatatgaacaaattcctgttgatgtttactggaccatcatcactattgctgcaattgttactcagttagattgcctca |
215 |
Q |
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| T |
33120865 |
gtcgttcctgctttggaacttgcatatgaacaaattcctgttgatgtttactggaccatcatcactattgctgcaattgttactcagttagattgcctca |
33120766 |
T |
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| Q |
216 |
tcactgaatcgtaagtttaattaaataatattgcatattcatctgagtcgtacttacagaacaatatcgatactttttaatat |
298 |
Q |
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| T |
33120765 |
tcactgaatcgtaagttttattaattaatatcgtttattcatctgagtcgtacttacagaacaatctcgatactttttaatat |
33120683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 33139345 - 33139440
Alignment:
| Q |
143 |
gaacaaattcctgttgatgtttactggaccatcatcactattgctgcaattgttactcagttagattgcctcatcactgaatcgtaagtttaatta |
238 |
Q |
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| T |
33139345 |
gaacaattccctgttgatgtatattgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcaccactaattcgtaagtttaatta |
33139440 |
T |
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