View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_low_23 (Length: 267)
Name: NF18898_low_23
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_23 |
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| [»] chr6 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 73 - 267
Target Start/End: Original strand, 6326061 - 6326255
Alignment:
| Q |
73 |
atctaattattacctgattcaatgttgtgtgtagcaagaacaacggatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
172 |
Q |
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| T |
6326061 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
6326160 |
T |
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| Q |
173 |
aattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagactcagccaatgtactttctgtagacatataagcacctctaacc |
267 |
Q |
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| T |
6326161 |
aattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctgtggacatataagcacctctaacc |
6326255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 73 - 267
Target Start/End: Original strand, 6333017 - 6333211
Alignment:
| Q |
73 |
atctaattattacctgattcaatgttgtgtgtagcaagaacaacggatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
172 |
Q |
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| T |
6333017 |
atctaattagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaagc |
6333116 |
T |
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| Q |
173 |
aattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagactcagccaatgtactttctgtagacatataagcacctctaacc |
267 |
Q |
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| T |
6333117 |
aattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctgtggacatataagcacctctaacc |
6333211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 6348295 - 6348491
Alignment:
| Q |
71 |
atatctaattattacctgattcaatgttgtgtgtagcaagaacaacggatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaa |
170 |
Q |
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| T |
6348295 |
atatctaataagtacctgattcaatgttgtgtgtagcaagaacaacagatccttttccattagcaaacttctcaagcaaataagatgaacaatcattgaa |
6348394 |
T |
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| Q |
171 |
gcaattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagactcagccaatgtactttctgtagacatataagcacctctaacc |
267 |
Q |
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| T |
6348395 |
gcaattatgtgtatctttaatagtatcatgaattggtgacttagacccaaaagattcagccaatgtactttctgttgacatataagcacctctaacc |
6348491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 6490339 - 6490199
Alignment:
| Q |
127 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgatttagacccaaaagact |
226 |
Q |
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| T |
6490339 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
6490240 |
T |
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| Q |
227 |
cagccaatgtactttctgtagacatataagcacctctaacc |
267 |
Q |
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| T |
6490239 |
cagccaattttctttcactagacatataagcacctctaacc |
6490199 |
T |
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