View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_low_24 (Length: 243)
Name: NF18898_low_24
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6348590 - 6348815
Alignment:
| Q |
1 |
cacaattggattatcatctttattatgcataattgctgatgagtatgtgaagtaatcaatagctggttgaacagtagtgtgttcagcatcaaccaaaagt |
100 |
Q |
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| T |
6348590 |
cacaataggattatcatctttattatgcataattgctgaagagtatgtgaagtaatcaatagctggttgaacagtagtgtgttcagcatcaaccaatatt |
6348689 |
T |
|
| Q |
101 |
ggcatgtttgcttcaacacattttttacaaagttgttgtaatctttggtttgctagttgaaaatcactttcttcttgtggtgttaatggttctggnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6348690 |
ggcatgtttgcttcaacacattttttacaaagttgttgtaatctttggtttgctagttgaaaatcactttcttcttgtggtgttaatggttctggttttt |
6348789 |
T |
|
| Q |
201 |
nngtagtgtggtataatggacttgat |
226 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
6348790 |
ttgtagtttggtataatggacttgat |
6348815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6326354 - 6326579
Alignment:
| Q |
1 |
cacaattggattatcatctttattatgcataattgctgatgagtatgtgaagtaatcaatagctggttgaacagtagtgtgttcagcatcaaccaaaagt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6326354 |
cacaataggattatcatctttattatgcataattgctgaagagtatgtgaagtaatcaatagctggttgaacagtagtgtgttcagcatcaaccaataag |
6326453 |
T |
|
| Q |
101 |
ggcatgtttgcttcaacacattttttacaaagttgttgtaatctttggtttgctagttgaaaatcactttcttcttgtggtgttaatggttctggnnnnn |
200 |
Q |
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| T |
6326454 |
ggcatgtttgcttcaacacattttttacaaagttgttgtaatctttggtttgctagttgaaaatcactttcttcttgtggtgttaatggttctggttttt |
6326553 |
T |
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| Q |
201 |
nngtagtgtggtataatggacttgat |
226 |
Q |
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||||| |||||||||||||||||| |
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| T |
6326554 |
ttgtagtatggtataatggacttgat |
6326579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6333310 - 6333535
Alignment:
| Q |
1 |
cacaattggattatcatctttattatgcataattgctgatgagtatgtgaagtaatcaatagctggttgaacagtagtgtgttcagcatcaaccaaaagt |
100 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6333310 |
cacaatagggttatcatctttattatgcataattgctgaagagtatgtgaagtaatcaatagctggttgaacagtagtgtgttcagcatcaaccaataag |
6333409 |
T |
|
| Q |
101 |
ggcatgtttgcttcaacacattttttacaaagttgttgtaatctttggtttgctagttgaaaatcactttcttcttgtggtgttaatggttctggnnnnn |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6333410 |
ggcatgtttgcttcaacacattttttacaaagttgttgtaatctttggtttgctagttgaaaatcactttcttcttgtggtgttaatggttctggttttt |
6333509 |
T |
|
| Q |
201 |
nngtagtgtggtataatggacttgat |
226 |
Q |
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|||||||||||||||||||||||| |
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| T |
6333510 |
ttgtagtgtggtataatggacttgat |
6333535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 6490083 - 6490005
Alignment:
| Q |
18 |
ctttattatgcataattgctgatgagtatgtgaagtaatcaatagctggttgaacagtagtgtgttcagcatcaaccaa |
96 |
Q |
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|||| ||||||| ||||||||| |||||||| |||||||||||||| |||||||| | ||| ||||| ||||||||||| |
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| T |
6490083 |
ctttgttatgcaaaattgctgaagagtatgtaaagtaatcaatagcaggttgaactgaagtatgttctgcatcaaccaa |
6490005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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