View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_low_25 (Length: 227)
Name: NF18898_low_25
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 48020027 - 48020104
Alignment:
| Q |
7 |
atgtctgcaacagagtgttgattccagcaacaaaaagcagtgtttgaatcatttcagctttttccacctacagttttc |
84 |
Q |
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| T |
48020027 |
atgtctgcaacagagtgttgattccagcaacaaaaagcagtgtttgaatcatttcagctttttccacctacagttttc |
48020104 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 48020198 - 48020246
Alignment:
| Q |
179 |
ttgatgattacattgccaccacccatcaaaggaacaagaatagtggaaa |
227 |
Q |
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| T |
48020198 |
ttgatgattacattgccaccacccatcaaaggaacaagaatagtggaaa |
48020246 |
T |
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