View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_low_27 (Length: 223)
Name: NF18898_low_27
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 36307070 - 36306867
Alignment:
| Q |
18 |
gtattttatctaatcatgttcttttaggtcccttatagttactgtctcatgatcattatatatagttttttacttataattagtgtctcgtgatcattat |
117 |
Q |
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| T |
36307070 |
gtattttatctaatcacgttcttttaggtcccttatagttactgtctcatgatcattatatttagttttttacttataattagtgtttcgtgatcattat |
36306971 |
T |
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| Q |
118 |
atatata----------gtttttgattgtgttcataatatctcacaagatactctcaatttgttgtaataaggatgaaaaccaagttgtttgtctctctg |
207 |
Q |
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| T |
36306970 |
atatatatatatatatagtttttgattgtgttcataatatctcacaagatactctcaatttgttgtaataaggatgaaaaccaagttgtttgtctctctg |
36306871 |
T |
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| Q |
208 |
tgct |
211 |
Q |
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|||| |
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| T |
36306870 |
tgct |
36306867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 36309885 - 36309691
Alignment:
| Q |
18 |
gtattttatctaatcatgttcttttaggtcc-cttatagttactgtctcatgatcattatatatagttttttacttataattagtgtctcgtgatcatta |
116 |
Q |
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| T |
36309885 |
gtattttatctaattatgttccttttgatcctcttatagttagcgtctcatgatcattatatatagtttttgacttatagttagtgtctcatggtcatta |
36309786 |
T |
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| Q |
117 |
tatatatagtttttgattgtgttcataatatctcacaagatactctcaatttgttgtaataaggatgaaaaccaagttgtttgtctctctgtgct |
211 |
Q |
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| T |
36309785 |
tatatatagtttttgactgtgttcataatatctcacaagatactttcaatttgttgaaataaggatgaaaaccaagttgtttgtctctgtgtgct |
36309691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 36346157 - 36345973
Alignment:
| Q |
18 |
gtattttatctaatcatgttcttttaggtcc-cttatagttactgtctcatgatcattatatatagttttttacttataattagtgtctcgtgatcatta |
116 |
Q |
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||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| || ||||||||| |||||||||| | ||||||| |
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| T |
36346157 |
gtattttatctaatcatgttctttttggtcctcttatatttattgtctcatgatcattatatataattatttacttattgttagtgtctcattatcatta |
36346058 |
T |
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| Q |
117 |
tatatatagtttttgattgtgttcataatatctcacaagatactctcaatttgttgtaataaggatgaaaaccaagttgtttgtct |
202 |
Q |
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| T |
36346057 |
tatatatagttttttattgtgttcataatatctcacaagatactcttaa-ttgtcgtaataaggatgaaaaccaagttgtttgtct |
36345973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 36324470 - 36324308
Alignment:
| Q |
49 |
cttatagttactgtctcatgatcattatatatagttttttacttataattagtgtctcgtgatcattatatatatagtttttgattgtgttcataatatc |
148 |
Q |
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| T |
36324470 |
cttatagttagcgtctcatgatcattatatatagtttttgacttatagttagtgtctcatggtcattatatatatagttttttattgtgttcatcatatc |
36324371 |
T |
|
| Q |
149 |
tcacaagatactctcaatttgttgtaataaggatgaaaaccaagttgtttgtctctctgtgct |
211 |
Q |
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| T |
36324370 |
tcacaagatactttcaatttgttgaaataaggatgaaaaccaagttgtttgtctctgtgtgct |
36324308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 36338383 - 36338200
Alignment:
| Q |
24 |
tatctaatcatgttcttttaggtcc-cttatagttactgtctcatgatcattatatatagttttttacttataattagtgtctcgtgatcattatatata |
122 |
Q |
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| T |
36338383 |
tatctaataatgttctttttggtcctcttatatttagtgtctcatgatcattatatattatttgttgcttatagttagtgtctcatgatcattatatata |
36338284 |
T |
|
| Q |
123 |
ta--gtttttgattgtgttcataatatctcacaagatactctcaatttgttgtaataaggatgaaaaccaagttgtttgtctct |
204 |
Q |
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|| | |||||||||||||||| |||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||||||| |
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| T |
36338283 |
tatagattttgattgtgttcatcatatctcataagatactcttaatttgtcgtaataagcatgaaaaccaagttgtttgtctct |
36338200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 36328118 - 36327993
Alignment:
| Q |
90 |
cttataattagtgtctcgtgatcattatatatatag----tttttgattgtgttcataatatctcacaagatactctcaatttgttgtaataaggatgaa |
185 |
Q |
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|||||| |||||||||| | ||||||||||||||| ||||| || || ||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
36328118 |
cttatagttagtgtctcattatcattatatatatatagttttttttatcgtattcatcatatctcacaagatactcttaatttgttgtaacaaggatgaa |
36328019 |
T |
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| Q |
186 |
aaccaagttgtttgtctctctgtgct |
211 |
Q |
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| T |
36328018 |
aaccaagttgtttatctctttgtgct |
36327993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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