View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18898_low_30 (Length: 215)
Name: NF18898_low_30
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 6639690 - 6639877
Alignment:
| Q |
14 |
aatatttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatattaattcaaaatacaaacaattatagtttcaacatatcatattgtgtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6639690 |
aatatttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatattaattcaaaatacaaacaattatagtttcaacatatcatattgtgtg |
6639789 |
T |
|
| Q |
114 |
taatatcttattgagtctacaagcatctaatcctcacaccacatatagcatgtccagcaactaaagattcctaatttctcttaatctt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6639790 |
taatatcttattgagtctacaagcatctaatcctcacaccacatatagcatgtccagcaactaaagattcctaatttctcttaatctt |
6639877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 31714977 - 31714918
Alignment:
| Q |
18 |
tttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatattaattcaaaat |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
31714977 |
tttctcaggaaaaaactcatccaaacatgttccgaaaccttaaagatattaattcaaaat |
31714918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 12316813 - 12316678
Alignment:
| Q |
18 |
tttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatatt--aattcaaaatacaaacaattatagtttcaacatatcatattgtgtgta |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12316813 |
tttctcaggaaaaa-ctcatccaaacatgttccaaagccttaaagatattttaattcaaaatacaaactattatagtttcaacatatcat---------- |
12316725 |
T |
|
| Q |
116 |
atatcttattgagtctacaagcatctaatcctcacaccacatatagcatgtcca |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12316724 |
-------attgagtctacaagcatctaatcctcacaccacatatagcatgtcca |
12316678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 499482 - 499570
Alignment:
| Q |
18 |
tttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatatt-aattcaaaatacaaacaattatagtttcaacatatcatat |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
499482 |
tttctcaggaaaaa-ctcatccaaacattttccaaagcctgaa-gatatttaattcaaaatacaaactattatagtttcaacatatcatat |
499570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 499573 - 499614
Alignment:
| Q |
160 |
agcatgtccagcaactaaagattcctaatttctcttaatctt |
201 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
499573 |
agcaagtccatcaactaaagattcctaatttctcttaatctt |
499614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University