View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18898_low_4 (Length: 599)

Name: NF18898_low_4
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18898_low_4
NF18898_low_4
[»] chr4 (14 HSPs)
chr4 (157-597)||(53179844-53180289)
chr4 (19-111)||(53180333-53180425)
chr4 (19-97)||(49039439-49039518)
chr4 (19-96)||(36045852-36045930)
chr4 (19-111)||(12585539-12585632)
chr4 (19-106)||(20610761-20610849)
chr4 (19-94)||(23226702-23226778)
chr4 (17-97)||(24039907-24039985)
chr4 (46-104)||(6202653-6202711)
chr4 (23-80)||(9084785-9084843)
chr4 (26-94)||(32887160-32887229)
chr4 (46-111)||(54854159-54854224)
chr4 (47-111)||(11863133-11863197)
chr4 (21-97)||(21023346-21023422)
[»] chr1 (13 HSPs)
chr1 (18-97)||(13941340-13941420)
chr1 (19-110)||(42908793-42908885)
chr1 (19-97)||(9768803-9768882)
chr1 (46-97)||(9976378-9976429)
chr1 (19-97)||(11238022-11238101)
chr1 (21-97)||(1721164-1721241)
chr1 (46-97)||(41677110-41677161)
chr1 (19-97)||(50199470-50199549)
chr1 (46-104)||(31965562-31965620)
chr1 (19-111)||(2903007-2903100)
chr1 (20-104)||(4605830-4605914)
chr1 (18-94)||(9410325-9410401)
chr1 (19-94)||(50575923-50575999)
[»] chr3 (4 HSPs)
chr3 (19-97)||(4045628-4045707)
chr3 (19-111)||(26583123-26583217)
chr3 (19-97)||(51017812-51017890)
chr3 (19-97)||(6951785-6951863)
[»] chr5 (9 HSPs)
chr5 (19-97)||(3535930-3536009)
chr5 (19-105)||(38040288-38040374)
chr5 (19-97)||(31556840-31556919)
chr5 (21-105)||(40250163-40250248)
chr5 (22-97)||(27006365-27006441)
chr5 (23-97)||(19608639-19608714)
chr5 (20-97)||(42553135-42553212)
chr5 (20-111)||(4985782-4985872)
chr5 (18-97)||(7147013-7147093)
[»] chr6 (7 HSPs)
chr6 (19-111)||(4844165-4844258)
chr6 (19-111)||(19680228-19680321)
chr6 (19-97)||(9422855-9422935)
chr6 (53-97)||(16110986-16111030)
chr6 (46-97)||(29204863-29204914)
chr6 (19-97)||(30833039-30833118)
chr6 (23-97)||(17347281-17347355)
[»] chr2 (8 HSPs)
chr2 (19-111)||(32944084-32944177)
chr2 (20-104)||(45314433-45314518)
chr2 (60-111)||(20942089-20942140)
chr2 (19-94)||(37065431-37065507)
chr2 (19-97)||(14307688-14307767)
chr2 (21-111)||(23663995-23664084)
chr2 (60-105)||(18089793-18089838)
chr2 (19-111)||(39334861-39334954)
[»] chr7 (14 HSPs)
chr7 (19-111)||(35498420-35498512)
chr7 (23-106)||(8903780-8903863)
chr7 (21-108)||(23430820-23430908)
chr7 (19-97)||(11808060-11808140)
chr7 (19-97)||(10020463-10020542)
chr7 (19-97)||(43712307-43712386)
chr7 (21-95)||(21877668-21877742)
chr7 (20-104)||(23799323-23799408)
chr7 (18-75)||(37410497-37410555)
chr7 (49-94)||(19687282-19687327)
chr7 (19-111)||(32309128-32309221)
chr7 (46-86)||(16916507-16916547)
chr7 (19-106)||(19837296-19837384)
chr7 (19-70)||(38032876-38032928)
[»] chr8 (10 HSPs)
chr8 (19-97)||(14011032-14011111)
chr8 (19-97)||(22847256-22847335)
chr8 (20-97)||(35779778-35779854)
chr8 (58-111)||(12926458-12926511)
chr8 (19-106)||(216132-216220)
chr8 (19-106)||(692692-692780)
chr8 (19-106)||(696901-696989)
chr8 (19-106)||(729755-729843)
chr8 (19-106)||(853650-853738)
chr8 (19-94)||(28979048-28979124)
[»] scaffold0009 (1 HSPs)
scaffold0009 (46-97)||(62763-62814)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 157 - 597
Target Start/End: Complemental strand, 53180289 - 53179844
Alignment:
Q  157 gaatagcttattcattttgttcttgatgggatcaagaaatactcctactgctactaga-----tactttataaaggagcttgactgattagttattttcc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||||    
T  53180289 gaatagcttattcattttgttcttgatgggatcaagaaatactcctactgctactggatacagtactttataaaggagcttgactgattagttattttcc 53180190  T
Q  252 aatttatcatttttggggcgtctaaactttttgctcctttgtgattgattaaaacagatgaaatgcatacacaatacatacatagtaacaagaagttatg 351  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53180189 aatttatcatttttggggcgtctaaactttttgttcctttgtgattgattaaaacagatgaaatgcatacacaatacatacatagtaacaagaagttatg 53180090  T
Q  352 tgaagctcgtgaagagaaagcaaattaaattaatatagcaatatctctagttatgatcatggcttgcatatccaatttgaactttcattggagactgttg 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53180089 tgaagctcgtgaagagaaagcaaattaaattaatatagcaatatctctagttatgatcatggcttgcatatccaatttgaactttcattggagactgttg 53179990  T
Q  452 ttgtggtcttagctgggcaactttaatggctaaaggtgaccacacgcgcatgtttgaataagtagttggctagaaagggactttgtctcttccaagttcc 551  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53179989 ttgtggtcttagctgggcaactttaatgcctaaaggtgaccacacacgcatgtttgaataagtagttggctagaaagggactttgtctcttccaagttcc 53179890  T
Q  552 cagattatggtggaacaagaactaagtaacatgcccctttgcttct 597  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  53179889 cagattatggtggaacaagaactaagtaacatgccccattgattct 53179844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 53180425 - 53180333
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||    
T  53180425 ggacatgcattgttatatacaggagtcgggttcgaacctcggacacctcagtaattcattttgaaaaaagtgaattctatttactaaattact 53180333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 49039518 - 49039439
Alignment:
Q  19 ggacatgcattgttatataca-ggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| || ||| | ||||||||||  |||||||| |||| ||||| ||||||||| ||||||||||    
T  49039518 ggacatgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattcta 49039439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 36045852 - 36045930
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattct 96  Q
    |||||||||||||||||| |||| || | | |||||||| ||||||||||||| | |||| |||||||| |||||||||    
T  36045852 ggacatgcattgttatatgcaggggttgagattcgaactccggacacctcacttagtcatattgaaaaaggtgaattct 36045930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 12585632 - 12585539
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgg-gttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||||||||||  | | | ||| ||||||||  || |||||||||| ||||||||||||||| ||||||||||  ||||||| ||||    
T  12585632 ggacatgcattgttatatgtaagggccggagttcgaaccccgaacacctcacttattcatcttgaaaaaggtgaattctagccactagactact 12585539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 20610761 - 20610849
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||||||||||||||| |||| | |||| |||||||| |||||| | |||| ||||| ||| ||||| ||||||||||  |||||||    
T  20610761 ggacatgcattgttatatgcaggggccggggttcgaactccggacatcccacttattcaccttaaaaaaggtgaattctagccactaga 20610849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 23226778 - 23226702
Alignment:
Q  19 ggacatgcattgttatatacaggag-tcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaatt 94  Q
    |||||||||||||||||| |||||| | ||||||||||  |||||| |||||| ||||| ||| ||||| |||||||    
T  23226778 ggacatgcattgttatatgcaggagttggggttcgaacaccggacatctcacttattcaccttaaaaaatgtgaatt 23226702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 24039907 - 24039985
Alignment:
Q  17 caggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||||||||||||   || ||| ||||||||||  || |||||||||| ||||| ||||||||| ||||||||||    
T  24039907 caggacatgcattgttatat---ggggtcggggttcgaaccccgaacacctcacttattcaccttgaaaaaggtgaattcta 24039985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 6202653 - 6202711
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcacta 104  Q
    ||||||||||  ||||||||  ||| ||||||||||||||| |||||||||| ||||||    
T  6202653 gggttcgaaccccggacaccctacttattcatcttgaaaaaggtgaattctagtcacta 6202711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 9084785 - 9084843
Alignment:
Q  23 atgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatctt 80  Q
    |||||||||||||| |||| |||||| ||||||| ||||||||| |||| |||||||||    
T  9084785 atgcattgttatatgcaggggtcgggattcgaacctcggacaccccacttattcatctt 9084843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 32887160 - 32887229
Alignment:
Q  26 cattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaatt 94  Q
    |||| |||||| | ||||||| |||||||||| |||||||| |||| ||| ||||||||||| |||||||    
T  32887160 catttttatatgccggagtcgtggttcgaactccggacaccccacttattaatcttgaaaaatgtgaatt 32887229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 54854224 - 54854159
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||  |||||| | |||| ||||| ||||||||||||||||||||  ||||||| ||||    
T  54854224 gggttcgaaccccggacatcacacttattcaccttgaaaaaagtgaattctagccactagactact 54854159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 11863197 - 11863133
Alignment:
Q  47 ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    |||||||||||| ||||||  ||| ||||| ||||| ||||||||||||||   |||||||||||    
T  11863197 ggttcgaacttcagacaccctacttattcaccttgataaaagtgaattctagctactagattact 11863133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 21023422 - 21023346
Alignment:
Q  21 acatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||| | ||  | ||||||||||  | |||||| |||| ||||| ||||||||| ||||||||||    
T  21023422 acatgcattgttatatccggggttggggttcgaacccccgacaccccacttattcaccttgaaaaaggtgaattcta 21023346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 13941340 - 13941420
Alignment:
Q  18 aggacatgcattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||||||||||| ||||  ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  13941340 aggacatgcattgttatatgcagggttcgaggttcgaacttcggacaccccacttattcatcttgaaaaaagtgaattcta 13941420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 42908793 - 42908885
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattac 110  Q
    |||||||||||||||||| |||| |||||| |||||||| |||| ||| |||| |||| |||||||||| | ||||||||  |||||||||||    
T  42908793 ggacatgcattgttatatgcaggggtcggggttcgaactccggataccccacttattcttcttgaaaaaggagaattctaaccactagattac 42908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 9768882 - 9768803
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| ||| ||||||||||  |||||||| |||| ||||| ||||||||| ||||||||||    
T  9768882 ggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattcta 9768803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 9976429 - 9976378
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||| |||||||| |||| ||||| ||||||||||||||||||||    
T  9976429 gggttcgaactccggacaccccacttattcaccttgaaaaaagtgaattcta 9976378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 11238101 - 11238022
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||| |||||| |||| |||||| ||||||   |||||||| |||| ||||||||||||||| ||||||||||    
T  11238101 ggacatgcattattatatgcaggggtcggggttcgaatcccggacaccccacttattcatcttgaaaaaggtgaattcta 11238022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 1721164 - 1721241
Alignment:
Q  21 acatgcattgttatatacaggagtcgggtt-cgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||| |||| | |||||| |||||  ||||||||||||| ||||| ||| ||||| ||||||||||    
T  1721164 acatgcattgttatatgcaggggccgggtttcgaaccccggacacctcacttattcaccttaaaaaaggtgaattcta 1721241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 41677110 - 41677161
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||| |||||||| |||| ||||| ||||||||| ||||||||||    
T  41677110 gggttcgaactccggacaccccacttattcaccttgaaaaaggtgaattcta 41677161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 50199549 - 50199470
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| | | ||||||||||  |||||||| |||| ||||| ||||||||| || |||||||    
T  50199549 ggacatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgaaaaaggtcaattcta 50199470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 31965562 - 31965620
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcacta 104  Q
    ||||||||||| || |||||||||| ||||| |||  ||||||||||||||| ||||||    
T  31965562 gggttcgaactccgaacacctcacttattcaccttttaaaaagtgaattctagtcacta 31965620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 2903100 - 2903007
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    |||||||||||||||||| |||  ||| ||||||||||  || ||||| |||| ||||| ||||||||| | ||||||||  |||||| |||||    
T  2903100 ggacatgcattgttatatgcagaggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggagaattctagccactaggttact 2903007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 4605914 - 4605830
Alignment:
Q  20 gacatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcacta 104  Q
    ||||||||||||||||| |||| | |  |||| ||| || ||||||||| | ||||| ||| ||||| |||||||||| ||||||    
T  4605914 gacatgcattgttatatgcaggggccaagttcaaacctcagacacctcatttattcaccttaaaaaaggtgaattctaatcacta 4605830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 9410401 - 9410325
Alignment:
Q  18 aggacatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaatt 94  Q
    ||||||||||| ||||||| ||||  |  | ||||||| || |||||| |||| ||||||||||||||| |||||||    
T  9410401 aggacatgcatagttatatgcagggttgagattcgaacctcagacaccccacttattcatcttgaaaaaggtgaatt 9410325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 50575923 - 50575999
Alignment:
Q  19 ggacatgcattgttatatacaggag-tcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaatt 94  Q
    |||||||||||||||||| || | | | |||||||||| || ||||||||||| ||||| ||| ||||| |||||||    
T  50575923 ggacatgcattgttatatgcaagggctggggttcgaacctcagacacctcacttattcaccttaaaaaaggtgaatt 50575999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 4045707 - 4045628
Alignment:
Q  19 ggacatgcattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  4045707 ggacatgcattgttatatgcaggggtcgaggttcgaacttcggacaccccacttattcatcttgaaaaaggtgaattcta 4045628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 26583123 - 26583217
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaa-agtgaattctattcactagattact 111  Q
    ||||||||||| |||||| |||| |||||| |||||||| ||||||||||| | ||||||||| ||||| |||||||||||  ||||||||||||    
T  26583123 ggacatgcattattatatgcaggggtcggggttcgaactacggacacctcaattattcatcttaaaaaatagtgaattctaaccactagattact 26583217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 51017812 - 51017890
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgg-gttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||||||||| ||||||||  |||||||| |||| |||||  |||||||||||||||||||    
T  51017812 ggacatgcattgttatatgcaggagtcggagttcgaac-ccggacaccccacttattcactttgaaaaaagtgaattcta 51017890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 6951863 - 6951785
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||| |||||| |||| ||||| || |||| ||||||||| |||| ||||| ||| |||||| | |||||||    
T  6951863 ggacatgcattattatatgcaggggtcggatttgaacctcggacaccgcacttattcaccttaaaaaaaataaattcta 6951785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 3536009 - 3535930
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||||||||||||||||| |||| |||||||  |||||||| |||| ||||| ||| ||||||||||||||||    
T  3536009 ggacatgcattgttatatacaggagccggggttcgaaccccggacaccccacttattcaccttaaaaaaagtgaattcta 3535930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 38040288 - 38040374
Alignment:
Q  19 ggacatgcattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactag 105  Q
    |||||||||||||||||| |||| |||| |||||||||| |||||| | |||| ||||||||||||||| ||||||| || |||||||    
T  38040288 ggacatgcattgttatatgcaggggtcgaggttcgaact-cggacatcccacttattcatcttgaaaaaggtgaattatagtcactag 38040374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 31556840 - 31556919
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgg-gttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| ||||| ||||||||  |||||||| |||| ||||| ||||||||  ||||||||||    
T  31556840 ggacatgcattgttatatgcaggggtcggagttcgaaccccggacaccccacttattcaccttgaaaagggtgaattcta 31556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 40250248 - 40250163
Alignment:
Q  21 acatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactag 105  Q
    |||||||||||||||| |||||||| |||||||||| ||| |||||  ||| ||||   |||||||||| |||||||| |||||||    
T  40250248 acatgcattgttatatgcaggagtcggggttcgaacctcgaacaccctacttattctcattgaaaaaagagaattctaatcactag 40250163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 27006365 - 27006441
Alignment:
Q  22 catgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||||||| | || |||||| |||||||| |||||||  |||| ||||| ||||||||| ||||||||||    
T  27006365 catgcattgttatatgctggggtcggggttcgaactccggacactccacttattcaccttgaaaaaggtgaattcta 27006441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 19608639 - 19608714
Alignment:
Q  23 atgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||| |||||| |||| |||||| |||||||| ||||||| ||||| ||||| ||| |||||| |||||||||    
T  19608639 atgcattattatatgcaggggtcggggttcgaactccggacacttcacttattcaccttaaaaaaaatgaattcta 19608714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 42553212 - 42553135
Alignment:
Q  20 gacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||||||||| |||| ||| ||||||||||  |||||||  |||| ||||| ||||||||| ||||||||||    
T  42553212 gacatgcattgttatatgcagg-gtcggggttcgaaccccggacactacacttattcaccttgaaaaatgtgaattcta 42553135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 4985782 - 4985872
Alignment:
Q  20 gacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    |||||||||||||||||| ||| ||| ||||||||||   |||||||  ||| |||||||||  |||||||||||||||| || |||| ||||    
T  4985782 gacatgcattgttatatataggggtcggggttcgaaccctggacaccctacttattcatctt--aaaaagtgaattctatccattagactact 4985872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7147093 - 7147013
Alignment:
Q  18 aggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||| |||||| |||| ||| |||||||||| || ||||||||| | ||| |  |||||||| ||||||||||    
T  7147093 aggacatgcattattatatgcaggggtcggggttcgaacctctgacacctcatttatttacattgaaaaaggtgaattcta 7147013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 4844165 - 4844258
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    |||||||||||||||||| |||| |||||| ||  ||| || ||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||    
T  4844165 ggacatgcattgttatatgcaggggtcggggtttaaacctcagacacctcacttattcaccttgaaaaaagtgaattctaaccactagactact 4844258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 19680321 - 19680228
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    |||||||||||||||||| |||||| | ||||||||||  |||||||| |||| ||||  ||||||||| ||||||||||  ||||| ||||||    
T  19680321 ggacatgcattgttatatgcaggagccggggttcgaaccccggacaccccacttattctccttgaaaaaggtgaattctagacactaaattact 19680228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 9422855 - 9422935
Alignment:
Q  19 ggacatgcattgttatatacaggag-tcgggttcgaacttcggacacctcactaattcatcttga-aaaaagtgaattcta 97  Q
    ||||||||||||||||||||| ||| | ||||||||||  |||||||| |||| ||||| ||||| |||| ||||||||||    
T  9422855 ggacatgcattgttatatacaagagctggggttcgaacaccggacaccccacttattcaccttgataaaaggtgaattcta 9422935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 16111030 - 16110986
Alignment:
Q  53 aacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||    
T  16111030 aacttcggacacctcacttatttatcttgaaaaaggtgaattcta 16110986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 29204914 - 29204863
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||| ||||| |||| ||||| ||| ||||||||||||||||    
T  29204914 gggttcgaacttcgaacaccccacttattcaccttaaaaaaagtgaattcta 29204863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 30833039 - 30833118
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| ||| ||||||||||  |||||||| |||| ||||  ||||||||| | ||||||||    
T  30833039 ggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattctccttgaaaaaggagaattcta 30833118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 17347281 - 17347355
Alignment:
Q  23 atgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||| || | ||||||||||||| | ||||||| |||| ||||| ||| ||||| || |||||||    
T  17347281 atgcattgttatatgcatgggtcgggttcgaaccttggacaccccacttattcaccttaaaaaaggtaaattcta 17347355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 32944084 - 32944177
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgg-gttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||| |||||| ||||| |||| |||| |||| || |||||||||| ||||| |||||||||||||||||||| ||| || ||||||    
T  32944084 ggacatgcattattatatgcaggaatcggagttcaaactccgaacacctcacttattcaccttgaaaaaagtgaattctaatcattaaattact 32944177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 45314433 - 45314518
Alignment:
Q  20 gacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcacta 104  Q
    ||||||||||||||||| |||  |||||| |||||||||| |||| | |||| ||||||||||||||| |||||||||| ||||||    
T  45314433 gacatgcattgttatatgcagaggtcggggttcgaacttcagacatcccacttattcatcttgaaaaatgtgaattctactcacta 45314518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 20942140 - 20942089
Alignment:
Q  60 gacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||||| ||||    
T  20942140 gacacctcacttattcaccttgaaaaaagtgaattctagtcactagactact 20942089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 37065507 - 37065431
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaatt 94  Q
    |||||||||||||||||| |||  |||||| |||||||| ||  ||||||||||||||| ||| ||||| |||||||    
T  37065507 ggacatgcattgttatatgcagtggtcggggttcgaactccgatcacctcactaattcaccttaaaaaatgtgaatt 37065431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 14307767 - 14307688
Alignment:
Q  19 ggacatgcattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| |||| |||||||||  || ||||| |||| |||||  || ||||||||||||||||    
T  14307767 ggacatgcattgttatatgcaggggtcgaggttcgaaccccgaacaccccacttattcactttaaaaaaagtgaattcta 14307688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 23663995 - 23664084
Alignment:
Q  21 acatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||| |||||| ||||  | ||||||||||| |  ||||| || | ||||| |||||||||||||||||||| |||||||| ||||    
T  23663995 acatgcattattatatgcagggttggggttcgaactccatacacc-catttattcaccttgaaaaaagtgaattctaatcactagactact 23664084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 18089793 - 18089838
Alignment:
Q  60 gacacctcactaattcatcttgaaaaaagtgaattctattcactag 105  Q
    ||||||||||| ||||| ||||||||| |||||||||| |||||||    
T  18089793 gacacctcacttattcaccttgaaaaacgtgaattctagtcactag 18089838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 39334954 - 39334861
Alignment:
Q  19 ggacatgcattgttatatacaggag-tcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||| ||||||||||| | | ||||||||||| | |||| | |||| |||||  |||||||| ||||||||||  ||||||| ||||    
T  39334954 ggacatgcattattatatacaggggctggggttcgaactccagacatcccacttattcactttgaaaaaggtgaattctagccactagactact 39334861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 35498420 - 35498512
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||| |||||| |||| || |||||| ||||||||||||| |||| |||||  |||||||| ||||||||||  ||||| ||||||    
T  35498420 ggacatgcattattatatgcaggggttgggttcaaacttcggacaccccacttattcactttgaaaaaggtgaattctagccactatattact 35498512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 8903863 - 8903780
Alignment:
Q  23 atgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||||||||||| |||||   ||||||||||  | ||||| ||||| |||||||||||| ||||||||||||| ||||||||    
T  8903863 atgcattgttatatgcaggatcggggttcgaaccccagacacatcacttattcatcttgaataaagtgaattctagtcactaga 8903780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 23430908 - 23430820
Alignment:
Q  21 acatgcattgttatatacaggagtcgg-gttcgaacttcggacacctcactaattcatcttgaaaaaa-gtgaattctattcactagatt 108  Q
    ||||||||| |||||| |||| ||||| ||| ||||||||||||||||||| ||||||||| |||||| |||| |||||  |||||||||    
T  23430908 acatgcattattatatgcagg-gtcggagtttgaacttcggacacctcacttattcatcttaaaaaaaggtgatttctagccactagatt 23430820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 11808060 - 11808140
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatctt-gaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| ||| ||||||||||  |||||||| |||| ||||| ||| |||||| ||||||||||    
T  11808060 ggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttagaaaaacgtgaattcta 11808140  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 10020542 - 10020463
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| || ||| |||||||  || ||| | |||| ||||||||||||||| ||||||||||    
T  10020542 ggacatgcattgttatatgcaggggttggggttcgaaccccgaacaacccacttattcatcttgaaaaaggtgaattcta 10020463  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 43712386 - 43712307
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| ||| |||| || |  ||||||||| | ||||||||    
T  43712386 ggacatgcattgttatatacaggggtcggggttcgaacctcggataccccacttatcctccttgaaaaaggagaattcta 43712307  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 21877742 - 21877668
Alignment:
Q  21 acatgcattgttatatacaggagtcgggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattc 95  Q
    ||||| |||||||||| ||||  | |||||||||| ||| ||||| |||| ||||||||||||||| ||| ||||    
T  21877742 acatggattgttatatgcagggctggggttcgaacctcgaacaccccacttattcatcttgaaaaaggtggattc 21877668  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 23799323 - 23799408
Alignment:
Q  20 gacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaa-gtgaattctattcacta 104  Q
    ||||||||||||||||| |||| |||||| ||||||| ||||||||| |||| |||| |||| |||||| || |||||||| |||||    
T  23799323 gacatgcattgttatatgcaggggtcgggattcgaacctcggacaccccacttattc-tctttaaaaaaggttaattctatacacta 23799408  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 37410555 - 37410497
Alignment:
Q  18 aggacatgcattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattc 75  Q
    ||||||||||||||||||| |||| |||  |||||||||| ||||||||||||| ||||    
T  37410555 aggacatgcattgttatatgcaggggtcaaggttcgaactccggacacctcacttattc 37410497  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 19687327 - 19687282
Alignment:
Q  49 ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaatt 94  Q
    |||||| | |||||||| |||| |||||||||||||||||||||||    
T  19687327 ttcgaattccggacaccccacttattcatcttgaaaaaagtgaatt 19687282  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 32309221 - 32309128
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgg-gttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    |||||||||||||||||| |||| ||||| |||||||  || |||||| || | ||||| ||| ||||| ||||||||||  ||||||| ||||    
T  32309221 ggacatgcattgttatatgcaggggtcggagttcgaatctcagacaccccagttattcaccttaaaaaatgtgaattctagccactagactact 32309128  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 16916507 - 16916547
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaa 86  Q
    ||||||||||||||||||||||||| ||||| ||| |||||    
T  16916507 gggttcgaacttcggacacctcacttattcagcttaaaaaa 16916547  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 19837384 - 19837296
Alignment:
Q  19 ggacatgcattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||||||||||||||| |||| |||| ||||| ||| |||||||||  ||| |||||| || ||||  |||||||||| ||| ||||    
T  19837384 ggacatgcattgttatatgcaggtgtcgcggttcaaacctcggacacccaacttattcattttcaaaatggtgaattctaatcaataga 19837296  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 38032928 - 38032876
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcact 70  Q
    ||||||||||||||||||||||| | | ||||||||||  |||||||||||||    
T  38032928 ggacatgcattgttatatacaggggccggggttcgaaccccggacacctcact 38032876  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 14011111 - 14011032
Alignment:
Q  19 ggacatgcattgttatatacaggagtcgg-gttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| | ||| |||||||| ||||||| | |||| ||||||||| ||||| ||||||||||    
T  14011111 ggacatgcattgttatatgcaggggccggagttcgaacctcggacatcccacttattcatcttaaaaaatgtgaattcta 14011032  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 22847335 - 22847256
Alignment:
Q  19 ggacatgcattgttatatacaggagtcg-ggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||||||||||| |||| |||| |||||||||  |  |||||||||| ||||| ||| ||||| ||||||||||    
T  22847335 ggacatgcattgttatatgcaggggtcgaggttcgaaccccacacacctcacttattcaccttaaaaaaggtgaattcta 22847256  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 35779778 - 35779854
Alignment:
Q  20 gacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    ||||||||||||||||| ||||  ||||| ||||||| | ||||||| |||| |||||||||||||||  |||||||||    
T  35779778 gacatgcattgttatatgcagg--tcggggttcgaacctaggacaccccacttattcatcttgaaaaagatgaattcta 35779854  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 12926511 - 12926458
Alignment:
Q  58 cggacacctcactaattcatcttgaaaaaagtgaattctattcactagattact 111  Q
    ||||||||||||| ||||||||||||||| || |||||||  ||||||| ||||    
T  12926511 cggacacctcacttattcatcttgaaaaaggtaaattctagccactagactact 12926458  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 216220 - 216132
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||| ||||||||||| |||  ||| |||||||||   ||||||||||||| ||||| ||||||||| |||||| |||  |||||||    
T  216220 ggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactaga 216132  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 692780 - 692692
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||| ||||||||||| |||  ||| |||||||||   ||||||||||||| ||||| ||||||||| |||||| |||  |||||||    
T  692780 ggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactaga 692692  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 696989 - 696901
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||| ||||||||||| |||  ||| |||||||||   ||||||||||||| ||||| ||||||||| |||||| |||  |||||||    
T  696989 ggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactaga 696901  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 729843 - 729755
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||| ||||||||||| |||  ||| |||||||||   ||||||||||||| ||||| ||||||||| |||||| |||  |||||||    
T  729843 ggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactaga 729755  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 853738 - 853650
Alignment:
Q  19 ggacatgcattgttatatacaggagtc-gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattctattcactaga 106  Q
    |||||| ||||||||||| |||  ||| |||||||||   ||||||||||||| ||||| ||||||||| |||||| |||  |||||||    
T  853738 ggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactaga 853650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 28979048 - 28979124
Alignment:
Q  19 ggacatgcattgttatatacaggagtcggg-ttcgaacttcggacacctcactaattcatcttgaaaaaagtgaatt 94  Q
    ||||||||||||||||||  ||| |||||  |||||||  ||||||||||||| ||||| ||| ||||| |||||||    
T  28979048 ggacatgcattgttatatgtaggggtcggaattcgaaccccggacacctcacttattcaccttaaaaaatgtgaatt 28979124  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 62763 - 62814
Alignment:
Q  46 gggttcgaacttcggacacctcactaattcatcttgaaaaaagtgaattcta 97  Q
    |||||||||| ||||||| | |||| ||||||||| ||||||||||||||||    
T  62763 gggttcgaacatcggacaacccacttattcatcttaaaaaaagtgaattcta 62814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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