View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18898_low_5 (Length: 521)
Name: NF18898_low_5
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 33266312 - 33265807
Alignment:
| Q |
1 |
aaaaaagtgggatttgcatgtctcaatagaatataaaactatgaaaaacttacatacataactatcatcattcacaacaacttaatgaccatgtttaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33266312 |
aaaaaagtgggatttgcatgtctcaatagaatataaaactatgaaaaacttacatacataactatcatcattcacaacaacttaatgaccctgtttaaca |
33266213 |
T |
|
| Q |
101 |
catttagaacaagaaattacaccaaccaaaaagatgacatttcattttaatgttccctcccacaaagtgtgtcatctgtgatcaccaacaacacctgagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33266212 |
catttagaacaagaaattacaccaaccaaaaagatgacatttcattttaatgttccctcccacaaagtgtgtcatttgtgatcaccaacaacacctgagt |
33266113 |
T |
|
| Q |
201 |
gggttccaattccaagcaaaagtactgataaattacttatataactttttgtttaaacatcaaaatattagtatatataaaatatagagagtaccaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33266112 |
gggttccaattccaagcaaaagtactgataaattacttatataactttttgtttaaacatcaaaatattagtatatataaaatatagagagtaccaatga |
33266013 |
T |
|
| Q |
301 |
tattccaacccatatacataagactagttatagttaacccccaaccatccaatgcagaaagnnnnnnnnctaatttctatccaaacactctagatgagtc |
400 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
33266012 |
tattccaacccatacacttaagactagttatagttaacccccaaccatccaatgcacaaa-aaaaaaaactaatttctagccaaacactctagatgagtc |
33265914 |
T |
|
| Q |
401 |
acaccactctcaaagtacaaacaatacctaaccgtagacttagccaattaccattctcacaaagacac-ttaatatgatctaataacaatacaactactg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
33265913 |
acaccactctcaaagtacaaacaatacctaaccgtagacttaaccaattaccattctcacaaagacactttaatataatctaataacaatacaactactg |
33265814 |
T |
|
| Q |
500 |
ttattaa |
506 |
Q |
| |
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||||||| |
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| T |
33265813 |
ttattaa |
33265807 |
T |
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