View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18898_low_7 (Length: 504)
Name: NF18898_low_7
Description: NF18898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18898_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 12 - 490
Target Start/End: Complemental strand, 33345423 - 33344945
Alignment:
| Q |
12 |
catcatcatgagttttctccaccacccctttgggaaaatagtagtaataactcaacacgtttgagtaaaaacccactctttgccactaccatgttgaaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33345423 |
catcatcatgagttttctccaccacccctttgggaaaatagtagtaataactcaacacatttgagtaaaaacccactctttgccactaccatgttgaaat |
33345324 |
T |
|
| Q |
112 |
tcaccaaaaaacaagttgaaaaacttaagaacaaagccaataacaatgaaaacaaggtacgaggttatactagttttgaggttattagtggttacttatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33345323 |
tcaccaaaaaacaagttgaaaaacttaagaacaaagccaataacaatgaaaacaaggtacgaggttatactagttttgaggttattagtggttacttatg |
33345224 |
T |
|
| Q |
212 |
gaggtgtgttagtaaagtgcgttttgaaggaaattggaaccaaccaacaaggttaacaactttggttaattgtagaaataggttgaatccacttttgcct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33345223 |
gaggtgtgttagtaaagtgcgttttgaaggaaattggaaccaaccaacaaggttaacaactttggttaattgtagaaataggttgaatccacctttgcct |
33345124 |
T |
|
| Q |
312 |
aagaattattttgggaatgcaacttttcctacagtgacacaaacttgttcatttgatgatgttgtgaacaagcctttttgttctgtggttgggaaagtga |
411 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33345123 |
atgaattattttgggaatgcaacttttcctacagtgacacaaacttgttcatttgatgatgttgtgaacaagcctttttgttctgtggttgggaaagtga |
33345024 |
T |
|
| Q |
412 |
gggaagctgttaaaaaggtgaatgatgagtatgtaagatcagttcttgattatgtagcaaatcagaacgatatgaattt |
490 |
Q |
| |
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| T |
33345023 |
gggaagctgttaaaaaggtgaatgatgagtatgtaagatcagttcttgattatgtagcaaatcagaaagatatgaattt |
33344945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 489
Target Start/End: Complemental strand, 33333826 - 33333326
Alignment:
| Q |
12 |
catcatcatgagttttctccaccacccctttgggaaaatagtagtaataactcaacacgtttgagtaaaa-------ac-ccactctttgccactaccat |
103 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||| | ||||||||| || |||||||||||||||||||| |
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| T |
33333826 |
catcatcatgagttttctccaccacctctttgggaaattagtagttataactcgacacatgtgagtaaaacaccattacaccactctttgccactaccat |
33333727 |
T |
|
| Q |
104 |
gttgaaattcaccaaaaaacaagttgaaaaac--ttaagaacaaagccaataacaatga---------aaacaaggtacgaggttatactagttttgagg |
192 |
Q |
| |
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||||||| |||||||| | |||||||||| || | ||||||||||| || |||||| | |||||||||||||||| ||||||||||||||| |
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|
| T |
33333726 |
gttgaaactcaccaaacaccaagttgaaatacgatcaagaacaaagcaaacaacaataatgaaaaccaaaacaaggtacgaggtaatactagttttgagg |
33333627 |
T |
|
| Q |
193 |
ttattagtggttacttatggaggtgtgttagtaaagtgcgttttgaaggaaattggaaccaaccaacaaggttaacaactttggttaattgtagaaatag |
292 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33333626 |
ttattagtggttacatatggaggtgtgtttgtaaagtgcgtgttgaaggaaattggaaccaaccaacaaggttaacaactttggttaattgtagaaacag |
33333527 |
T |
|
| Q |
293 |
gttgaatccacttttgcctaagaattattttgggaatgcaacttttcctaca----gtgacacaaacttgttcatttgatgatgttgtgaacaagccttt |
388 |
Q |
| |
|
||||||||||| | | || ||||| |||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| || |
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|
| T |
33333526 |
gttgaatccacctcttcccaagaactattttggatatgcaacatttcctacgtacggtgacacaaaattgttcatttgatgatgttgtgaacaagccatt |
33333427 |
T |
|
| Q |
389 |
ttgttctgtggttgggaaagtgagggaagctgttaaaaaggtgaatgatgagtatgtaagatcagttcttgattatgtagcaaatcagaacgatatgaat |
488 |
Q |
| |
|
|||| |||||||||||||||||||||||| || | |||||||| |||| ||||||||||| |||||||||||||| | ||||||||| ||||||||| |
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|
| T |
33333426 |
atgttatgtggttgggaaagtgagggaagcaattgagaaggtgaacaatgaatatgtaagatctgttcttgattatgttgaaaatcagaaggatatgaat |
33333327 |
T |
|
| Q |
489 |
t |
489 |
Q |
| |
|
| |
|
|
| T |
33333326 |
t |
33333326 |
T |
|
Back To:
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