View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_high_13 (Length: 293)
Name: NF18899_high_13
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 12367676 - 12367448
Alignment:
| Q |
49 |
aaattattcactaaattgacgtctctaatacgttgcgatgaaattagagacaaagttttcattttctatctctatttatatggctgttactatttcaact |
148 |
Q |
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| T |
12367676 |
aaattattcactaaattgacgtctctaatactttgcgatgaaattagagaca--gttttcattttctatctctatttatatggctgttactatttcaact |
12367579 |
T |
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| Q |
149 |
atttcnnnnnnnnnggtagatctatttcaactatttctaatatttaatatacataaatatttcggttatcatgttataggtacgaaatttctaccgccgt |
248 |
Q |
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| T |
12367578 |
attttttttttttttgtagatctatttcaagtatttctaatagttaatatacataaatatttgggttatcatgttagaggtacgaaatttctaccgccgt |
12367479 |
T |
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| Q |
249 |
ttagagcgaaaaatttccaatatagtatctg |
279 |
Q |
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| T |
12367478 |
ttagagcgacaaatttccaatatagtatctg |
12367448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 12367731 - 12367689
Alignment:
| Q |
12 |
tactagaaaaattaaagttaaaatgacgacagaaattaaatta |
54 |
Q |
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| T |
12367731 |
tactagaaaaattaaagttaaaatgacgacagaaattaaatta |
12367689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 33731695 - 33731655
Alignment:
| Q |
211 |
cggttatcatgttataggtacgaaatttctaccgccgttta |
251 |
Q |
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| T |
33731695 |
cggttatcatgttattggtacgaagtttcaaccgccgttta |
33731655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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