View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18899_high_14 (Length: 272)

Name: NF18899_high_14
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18899_high_14
NF18899_high_14
[»] chr7 (3 HSPs)
chr7 (23-171)||(15668583-15668731)
chr7 (184-263)||(1537947-1538026)
chr7 (196-263)||(3997161-3997228)
[»] scaffold0289 (1 HSPs)
scaffold0289 (23-171)||(21359-21507)
[»] chr6 (6 HSPs)
chr6 (179-263)||(31633566-31633650)
chr6 (180-263)||(33325828-33325910)
chr6 (192-260)||(17112220-17112288)
chr6 (181-263)||(14372172-14372254)
chr6 (194-254)||(16298790-16298850)
chr6 (180-264)||(21809225-21809309)
[»] scaffold0012 (2 HSPs)
scaffold0012 (179-261)||(52721-52803)
scaffold0012 (181-263)||(103716-103798)
[»] scaffold0195 (2 HSPs)
scaffold0195 (179-263)||(8971-9054)
scaffold0195 (179-263)||(14360-14443)
[»] chr8 (4 HSPs)
chr8 (179-263)||(29250227-29250310)
chr8 (180-262)||(29355117-29355199)
chr8 (181-264)||(17274719-17274802)
chr8 (194-263)||(24184750-24184819)
[»] chr1 (15 HSPs)
chr1 (179-263)||(32943761-32943844)
chr1 (181-263)||(12629235-12629317)
chr1 (180-263)||(19100295-19100377)
chr1 (179-263)||(34507854-34507937)
chr1 (180-264)||(13533444-13533528)
chr1 (181-264)||(15120850-15120933)
chr1 (181-264)||(15145038-15145121)
chr1 (181-264)||(34517688-34517771)
chr1 (179-262)||(34879900-34879983)
chr1 (181-263)||(15114126-15114208)
chr1 (181-263)||(15127142-15127224)
chr1 (179-261)||(28016008-28016090)
chr1 (179-263)||(3833411-3833494)
chr1 (179-263)||(31893124-31893206)
chr1 (179-263)||(41574283-41574366)
[»] chr3 (2 HSPs)
chr3 (183-262)||(10997438-10997517)
chr3 (180-260)||(1051302-1051382)
[»] scaffold0291 (1 HSPs)
scaffold0291 (179-263)||(15534-15618)
[»] chr2 (5 HSPs)
chr2 (179-263)||(21565868-21565952)
chr2 (179-263)||(40926445-40926529)
chr2 (179-263)||(17151305-17151389)
chr2 (181-263)||(20477435-20477517)
chr2 (181-263)||(22169952-22170034)
[»] chr4 (4 HSPs)
chr4 (192-263)||(23795472-23795543)
chr4 (179-263)||(20367495-20367579)
chr4 (179-239)||(25219687-25219747)
chr4 (181-225)||(20543193-20543237)
[»] scaffold0013 (1 HSPs)
scaffold0013 (179-263)||(100987-101070)
[»] chr5 (4 HSPs)
chr5 (208-263)||(2259410-2259465)
chr5 (181-263)||(5781066-5781148)
chr5 (181-263)||(19068680-19068762)
chr5 (62-90)||(17237793-17237821)
[»] scaffold0437 (1 HSPs)
scaffold0437 (181-263)||(14316-14398)
[»] scaffold0114 (1 HSPs)
scaffold0114 (208-261)||(2989-3042)
[»] scaffold0123 (1 HSPs)
scaffold0123 (211-263)||(29985-30037)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 15668583 - 15668731
Alignment:
Q  23 atgcacatgcctaaacgcaccgtatttgaaagagtcgaaaaagaagcaacaatattgcatttaaatctctctggactcggtttagtccaacgaatattat 122  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15668583 atgcacatgcctaaatgcaccgtatttgaaagagtcgaaaaagaagcaacaatattgcatttaaatctctctggactcggtttagtccaacgaatattat 15668682  T
Q  123 gctggtcaacctgtgaattttatgggtgtggcaaaacttcacccgctgc 171  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  15668683 gctggtcaacctgtgaattttatgggtgtggcgaaacttcaccagctgc 15668731  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 1537947 - 1538026
Alignment:
Q  184 gcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||| |||||||||||  ||||||||||||| ||||||| ||||||| || |  | ||||||||| ||||||||    
T  1537947 gcaaggagtagggacagacatcaagaggaaacaccgacatcccaactaggttgccacctagggaaacctccatcctatgc 1538026  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 3997161 - 3997228
Alignment:
Q  196 gacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||| ||||| |||||||| ||||||| ||||||||||||| | ||  |||||||| |||||    
T  3997161 gacagacatcaggaggcaacaccgacatcccaactaggttggcatcccgggacgcctccgtcttatgc 3997228  T

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Target: scaffold0289 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 21359 - 21507
Alignment:
Q  23 atgcacatgcctaaacgcaccgtatttgaaagagtcgaaaaagaagcaacaatattgcatttaaatctctctggactcggtttagtccaacgaatattat 122  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21359 atgcacatgcctaaatgcaccgtatttgaaagagtcaaaaaagaagcaacaatattgcatttaaatctctctgaactcggtttagtccaacgaatattat 21458  T
Q  123 gctggtcaacctgtgaattttatgggtgtggcaaaacttcacccgctgc 171  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  21459 gctggtcaacctgtgaattttatgggtgtggcgaaacttcaccagctgc 21507  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 31633566 - 31633650
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||    
T  31633566 gctaagcaaggagtaaggacagacatcgggaggaaacaccgacatcccaactagattggcatcctgggaaacctccgtcctatgc 31633650  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 33325828 - 33325910
Alignment:
Q  180 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||| |||| |||||||| | ||||||||||||||||||    
T  33325828 ctaagcaaggagtaaggacagacattgggaggaaacaccgacataccaactaggctggcatcc-gggaaacctccgtcctatgc 33325910  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 17112220 - 17112288
Alignment:
Q  192 taaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtccta 260  Q
    ||||||||||||||||||||||||||||| ||  ||| ||| ||||||| | | ||||||||| |||||    
T  17112220 taaggacagacatcgggaggaaacaccgacatatcaactagattggcattccgggaaacctccatccta 17112288  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 14372172 - 14372254
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||| | |||||||||||  |||| |||| ||| ||||||| ||||||||||  | |||||| |||| ||||||||    
T  14372172 taagcaaggagaatggacagacatcaagaggcaacatcgacatcccaactaggttggcactccgagaaatctccatcctatgc 14372254  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 16298790 - 16298850
Alignment:
Q  194 aggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctcc 254  Q
    ||||||| |||||||||| | || ||| ||||||| ||||||||||||| |||| ||||||    
T  16298790 aggacaggcatcgggaggcatcatcgacatcccaactaggttggcatcccgagatacctcc 16298850  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 21809309 - 21809225
Alignment:
Q  180 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgct 264  Q
    |||||||| ||||||||  ||||||| ||| |||||||||| ||   |||||| || ||| |  |||||||||||||||||||||    
T  21809309 ctaagcaatgagtaagggtagacatcaggaagaaacaccgacatttaaattagattagcacctcgagaaacctccgtcctatgct 21809225  T

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Target: scaffold0012 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 52803 - 52721
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 261  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | || ||||||||||||||||    
T  52803 gctaagcaaggagtaaggacagacatcgggaggaaacaccgaaatcccaactaggttggcaccttgggaaacctccgtcctat 52721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 103798 - 103716
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||| | |||| ||||||  |||| |||| ||| ||||||| |||||||||| || |||||| |||| ||||||||    
T  103798 taagcaaggagaatggaccgacatcaagaggcaacatcgacatcccaactaggttggcaccccgagaaatctccatcctatgc 103716  T

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Target: scaffold0195 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 8971 - 9054
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| | ||||||||||||||||||    
T  8971 gctaagcaaggagtaaggacagacatcgggaggaaacaccgacataccaactaggttggcatcc-gggaaacctccgtcctatgc 9054  T

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Target: scaffold0195; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 14360 - 14443
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| | ||||||||||||||||||    
T  14360 gctaagcaaggagtaaggacagacatcgggaggaaacaccgacataccaactaggttggcatcc-gggaaacctccgtcctatgc 14443  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 29250227 - 29250310
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||| | ||||||||||||||||||    
T  29250227 gctaagcaaggagtaaggacagacatcgggaggaaacaccggcataccaactaggttggcatcc-gggaaacctccgtcctatgc 29250310  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 29355199 - 29355117
Alignment:
Q  180 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatg 262  Q
    ||||||| ||||||||||||  |||| |||| ||| ||||| |||| ||||||||| |||||| | |||||||||| ||||||    
T  29355199 ctaagcagggagtaaggacattcatcaggagaaaaaaccgacatcctaattaggtttgcatcccgggaaacctccgacctatg 29355117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 17274802 - 17274719
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgct 264  Q
    ||||||||||| | |||||||||||  |||| |||| ||| ||||||| | |||||||| | ||||||| |||| |||||||||    
T  17274802 taagcaaggagaatggacagacatcaagaggcaacatcgacatcccaacttggttggcaccgtgagaaatctccatcctatgct 17274719  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 24184750 - 24184819
Alignment:
Q  194 aggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||| |||||  |||| |||||||| ||||||| ||||||||||||| | ||| ||||| ||||||||    
T  24184750 aggacaaacatcaagagggaacaccgacatcccaactaggttggcatcccgggaaccctccatcctatgc 24184819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 32943844 - 32943761
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| | |||||||||||| |||||    
T  32943844 gctaagcaaggagtaaggacagacattgggaggaaacaccgacataccaattaggttggcatcc-gggaaacctccgtcttatgc 32943761  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 12629235 - 12629317
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||| ||| ||||||||| | ||||||||||||||||||    
T  12629235 taagcaaggagtaaggacaaacatcgggagaaaacaccgacatcccaactagattggcatcccgggaaacctccgtcctatgc 12629317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 19100377 - 19100295
Alignment:
Q  180 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||||||||| |||||||||||||||| ||| || |||| ||||||||||||| | |||||| |||||||||||    
T  19100377 ctaagcaaggagtaaggacaaacatcgggaggaaacatcgacataccaactaggttggcatcc-gggaaaccaccgtcctatgc 19100295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 34507854 - 34507937
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||||||||||||| |||||||||||||| || || || |||| ||||||||||| | | ||||||||||||||||||    
T  34507854 gctaagcaaggagtaaggacatacatcgggaggaaatactgacataccaactaggttggcattc-gggaaacctccgtcctatgc 34507937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 13533528 - 13533444
Alignment:
Q  180 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgct 264  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||  || ||| || ||| || || ||||||||||||||||||    
T  13533528 ctaagcaaggagtaagggtagacatcaggaggaaacaccgatatctaaactagattagcaccccgaaaaacctccgtcctatgct 13533444  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 15120850 - 15120933
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgct 264  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| || | ||||||||| |||||||||    
T  15120850 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccgggaaacctccatcctatgct 15120933  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 15145038 - 15145121
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgct 264  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| || | ||||||||| |||||||||    
T  15145038 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccgggaaacctccatcctatgct 15145121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 34517771 - 34517688
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgct 264  Q
    ||||||||||| || ||||  ||||  || |||||| ||| |||||||| |||||||||||| ||||||||||| |||||||||    
T  34517771 taagcaaggagaaatgacaagcatcaagaagaaacatcgacatcccaataaggttggcatcccgagaaacctccatcctatgct 34517688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 34879900 - 34879983
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatg 262  Q
    |||| ||| |||||||||||||||||  | || ||||||||| |||| || |||||||||| || || ||||||||||||||||    
T  34879900 gctaggcagggagtaaggacagacattagaagaaaacaccgacatcctaactaggttggcaccccgaaaaacctccgtcctatg 34879983  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 15114126 - 15114208
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| ||   ||||||||| ||||||||    
T  15114126 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccaggaaacctccatcctatgc 15114208  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 15127142 - 15127224
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||||| |||| ||||| ||||||||||| || || ||||||||||| ||| ||   ||||||||| ||||||||    
T  15127142 taagcaaggagtaacgacaaacatcaggaggaaacactgacatgccaattaggttagcaccccaggaaacctccatcctatgc 15127224  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 28016090 - 28016008
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 261  Q
    |||||||| |||||||||||||||||| | |||||||||||| ||||||| || |||| || ||   |||| |||||||||||    
T  28016090 gctaagcagggagtaaggacagacatcagaaggaaacaccgacatcccaactaagttgacaccccaggaaatctccgtcctat 28016008  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 3833411 - 3833494
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||| |||| ||| ||||||||| |||||  ||||||| ||||||| |||||||||| || | ||| ||||||||||||||    
T  3833411 gctaagcatggagaaag-acagacatcaggaggctacaccgacatcccaactaggttggcaccccgggaagcctccgtcctatgc 3833494  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 31893206 - 31893124
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||| |||| ||| ||||||||| ||||| | |||||| ||||||| ||||||||||||| ||||| ||||| ||||||||    
T  31893206 gctaagcagggaggaag-acagacatcaggaggca-caccgacatcccaactaggttggcatcccgagaagcctccatcctatgc 31893124  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 41574283 - 41574366
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||| |||||||| |||||||||||||   |||||||||| | ||||||| ||||||| || |||| ||||||||| ||||||||    
T  41574283 gctaggcaaggagaaaggacagacatcaaaaggaaacaccaacatcccaactaggttgacaccctg-gaaacctccatcctatgc 41574366  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 10997517 - 10997438
Alignment:
Q  183 agcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatg 262  Q
    |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| || |||||||||||||| ||||    
T  10997517 agcaaggactaaggacagacatcgggacgaaacaccgacatcccaattaggttggcaccccgagaaacctccgtcttatg 10997438  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 1051302 - 1051382
Alignment:
Q  180 ctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtccta 260  Q
    ||||||||||||  |||||| |||||  |||| |||||||| ||||||| |||||||||| |  | ||||||||| |||||    
T  1051302 ctaagcaaggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcacctcgggaaacctccatccta 1051382  T

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Target: scaffold0291 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 15534 - 15618
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||||||||||||||||||| |||| ||||||||| || ||||  ||||||||| |||  |||| |||||||||||||    
T  15534 gctaagcaaggagtaaggacagacatcaggagaaaacaccgacattccaaccaggttggcaccctaggaaatctccgtcctatgc 15618  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 21565952 - 21565868
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||| |||||||||||| |||||  |||||||||| || || |||| ||||||||||||| |  |||||||||||||||||    
T  21565952 gctaagcatggagtaaggacaaacatcatgaggaaacactgacattccaactaggttggcatcccggaaaacctccgtcctatgc 21565868  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 40926445 - 40926529
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||| ||||||||||||  |||| |||||||||| ||| ||||||| |||||||||| || | ||||||||| ||||||||    
T  40926445 gctaagcagggagtaaggacatgcatcaggaggaaacatcgacatcccaactaggttggcaccccgggaaacctccatcctatgc 40926529  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 17151389 - 17151305
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||||||||||| || |||| ||||||||||| || || |||| ||||||||||  | | ||||||||| ||||||||    
T  17151389 gctaagcaaggagtaaggataggcatcaggaggaaacactgacatgccaactaggttggcactccgggaaacctccatcctatgc 17151305  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 20477517 - 20477435
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||| |||||||||||||  |||| | || ||| ||||||| |||||||||| || |||| |||||| ||||||||    
T  20477517 taagcaaggagaaaggacagacatcaagaggcatcatcgacatcccaactaggttggcaccccgagatacctccatcctatgc 20477435  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 22169952 - 22170034
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||  ||||||| ||||  |||| | || | | ||||||||||||||||||||| |||| |||||| ||||||||    
T  22169952 taagcaaggagagaggacaggcatcaagaggcatcatcaacatcccaattaggttggcatcccgagagacctccatcctatgc 22170034  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 23795543 - 23795472
Alignment:
Q  192 taaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||| ||||| |||| ||| ||||| ||||||| ||||||||||||||| ||||||||| ||||||||    
T  23795543 taaggacaaacatcaggagaaaataccgacatcccaactaggttggcatcctgtgaaacctccatcctatgc 23795472  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 20367495 - 20367579
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||| |||||||||||||  |||||||||||| | |||||| | |||||| ||||  | |||||||| |||||||||    
T  20367495 gctaagcaaggaataaggacagacattaggaggaaacaccaacatcccagtcaggttgacatctcgggaaacctctgtcctatgc 20367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 25219747 - 25219687
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggca 239  Q
    |||| |||||||||||||||| ||||| |||||||||||||| || |||| ||||||||||    
T  25219747 gctacgcaaggagtaaggacatacatcaggaggaaacaccgacattccaactaggttggca 25219687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 20543237 - 20543193
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcc 225  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  20543237 taagcaatgagtaaggacagacatcaagaggaaacaccgacatcc 20543193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 101070 - 100987
Alignment:
Q  179 gctaagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||||||||||||||||||| || | ||| ||||| || ||||  ||||||||| || | ||||||||||||||||||    
T  101070 gctaagcaaggagtaaggacagacatcaggggaaaataccgacattccaaccaggttggca-cccgggaaacctccgtcctatgc 100987  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 2259410 - 2259465
Alignment:
Q  208 gaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||||||||| ||||||| ||||||||||||| | ||||||||| ||||||||    
T  2259410 gaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatcctatgc 2259465  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 5781066 - 5781148
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||  |||||||||||   |||| |||| ||| ||||||| ||||||||||||| ||||||| ||| ||||||||    
T  5781066 taagcaaggagggaggacagacattaagaggcaacatcgacatcccaactaggttggcatcccgagaaacttccatcctatgc 5781148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 19068680 - 19068762
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    ||||||| |||  |||||||||||   |||| |||| ||| |||| || |||||||||| |||||||||||||| ||||||||    
T  19068680 taagcaatgagagaggacagacattaagaggcaacatcgacatccaaactaggttggcaccctgagaaacctccatcctatgc 19068762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 17237793 - 17237821
Alignment:
Q  62 aaagaagcaacaatattgcatttaaatct 90  Q
    |||||||||||||||||||||||||||||    
T  17237793 aaagaagcaacaatattgcatttaaatct 17237821  T

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Target: scaffold0437 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 14316 - 14398
Alignment:
Q  181 taagcaaggagtaaggacagacatcgggaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||||  ||||||||||||  |||| | || ||| ||||||| ||||||||||||| |||| |||||| ||||||||    
T  14316 taagcaaggagagaggacagacatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgc 14398  T

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Target: scaffold0114 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 2989 - 3042
Alignment:
Q  208 gaggaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctat 261  Q
    ||||||||||||| ||||| ||||||||||||||| | | ||||||| ||||||    
T  2989 gaggaaacaccgacatcccgattaggttggcatcccggggaacctccatcctat 3042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 29985 - 30037
Alignment:
Q  211 gaaacaccgatatcccaattaggttggcatcctgagaaacctccgtcctatgc 263  Q
    |||||||||| ||||||| ||||||||||||| |  |||||| ||||||||||    
T  29985 gaaacaccgacatcccaactaggttggcatcccggaaaaccttcgtcctatgc 30037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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