View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_high_16 (Length: 265)
Name: NF18899_high_16
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 4482796 - 4483054
Alignment:
| Q |
6 |
agcagcacagatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg |
105 |
Q |
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| T |
4482796 |
agcaccacaaatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg |
4482895 |
T |
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| Q |
106 |
ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttttattaaacacttagaaaagtgaagggtgattactctac |
205 |
Q |
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| T |
4482896 |
ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaagg-ttttattaaacactttgaaaagtgaagcgtgattactctac |
4482994 |
T |
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| Q |
206 |
tcggaattaattttagtagctgcatcgcgcaggagtccaaaccttttgcaggcggggaaa |
265 |
Q |
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| T |
4482995 |
tcggaattaattttagttgctgcctcgggcaggagtccaaaccttttgcaggcggggaaa |
4483054 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 42796343 - 42796311
Alignment:
| Q |
88 |
ccaaatgtcactgctgggttaatgtgaccacct |
120 |
Q |
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| T |
42796343 |
ccaaatgtcactgctgggttaatgtgaccacct |
42796311 |
T |
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