View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18899_high_20 (Length: 232)
Name: NF18899_high_20
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 36425844 - 36425629
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425844 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
36425745 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36425744 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacgg |
36425645 |
T |
|
| Q |
201 |
ccatatctcgtttcat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36425644 |
ccatatctcgtttcat |
36425629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36411678 - 36411470
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
36411678 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattgactctcttgactgtcccacatgaatgtttgaaagaaacca |
36411579 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacgg |
200 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| | |
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|
| T |
36411578 |
gattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgagagtgatacatagttgtcatcttcaacccaagaaacattacgaactg |
36411479 |
T |
|
| Q |
201 |
ccatatctc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
36411478 |
ccatatctc |
36411470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36417009 - 36416801
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
36417009 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattgactctcttgactgtcccacatgaatgtttgaaagaaacca |
36416910 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacgg |
200 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| | |
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|
| T |
36416909 |
gattgctgaaccactatccttgtaatgacagacttattaaacatgttatatgagagtgatacatagttgtcatcttcaacccaagaaacattacgaactg |
36416810 |
T |
|
| Q |
201 |
ccatatctc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
36416809 |
ccatatctc |
36416801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 36369073 - 36368858
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
36369073 |
tccacaggttccatagttatcacattggtctgttggttcagaccagtaccggttccattggctcttttgactgtcccacatgaatgtttgaaagaaacca |
36368974 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgttacgaacgg |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| ||| | || |
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|
| T |
36368973 |
gattgctgaaccgctattctagtaatgacagacttatcgaacatgttatacgtaagtgctacatagttgtcatcttcaaccaaagaaacattaaaagtgg |
36368874 |
T |
|
| Q |
201 |
ccatatctcgtttcat |
216 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36368873 |
tcatatctcgtttcat |
36368858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 36387651 - 36387478
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||||||||| |||||| |||||| ||| | ||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
36387651 |
tccacatgttccatagttaccacattcgtcagatggttcagaccagcaccggctccattggcccgtttgactgtcccacctgaatgtttgaaggaaacca |
36387552 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatc |
174 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36387551 |
gattgctgaatcactaccctagttatgacagacttagcgaacatgttatatgagaatgctacatagttatcatc |
36387478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 36373692 - 36373519
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||| ||||| |||||| ||||||||| |||||||||||||||| ||| | ||||||| || |||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
36373692 |
tccacaggttccatagttatcacattggtttgttggttcagaccagaacctgttccattgacttttttgattgttccaagtgaatatttgaaagaaacca |
36373593 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatc |
174 |
Q |
| |
|
||||||||||| |||| ||||| |||||| |||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36373592 |
gattgctgaacaactatcctagctatgacagacttatcaaacatgttatatgagattgctacatagttatcatc |
36373519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 36397431 - 36397245
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||| ||||| |||||| ||||||||| ||||||||| |||||| ||| | ||||||| ||||||||| ||| ||| |||||| |||||| ||||||| |
|
|
| T |
36397431 |
tccacacgttccatagttatcacattggtttgttggttctgaccagaacctgttccattgactcttttgattgttccaagtgaatatttgaatgaaacca |
36397332 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaa |
187 |
Q |
| |
|
||||||||||| |||| ||||| |||||| |||||| |||||||| ||||| |||||||||||||| || ||||| || |||||| |
|
|
| T |
36397331 |
gattgctgaacaactaacctagctatgacagacttatcaaacatgtcgtatgaaagtgctacatagttatcttcttccacaaaagaa |
36397245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 36404364 - 36404172
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| || || ||||| ||||||| |||||| | | ||||||||||| |||||||||||||| |
|
|
| T |
36404364 |
tccacatgttccatagttatcacattggtctgttggttctgaatagaaccggttccattgattcttttcattcccccacgtgaatatttgaaagaaacca |
36404265 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgtta |
193 |
Q |
| |
|
||||| | ||| ||| ||||| |||||| |||||| ||||||||||||||||| |||||| |||| |||||||| || |||||||||||| |
|
|
| T |
36404264 |
gattgattaacaactttcctagcgatgacagacttatcaaacatgttatatgagattgctacggagttttcatcttccacaaaagaaacgtta |
36404172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 36433701 - 36433509
Alignment:
| Q |
1 |
tccacatgttccgtagttagcacattggtctgttggttcagaccagtaccggctccattggctcttttgactgtcccacgtgaatgtttgaaagaaacca |
100 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||||| || || || || ||||||| || |||| | |||||||| | ||| |||||||||||||| |
|
|
| T |
36433701 |
tccacatgttccatagttatcacattggtttgttggttgtgaatagaactggttccattgactttttttattgtcccacattaatatttgaaagaaacca |
36433602 |
T |
|
| Q |
101 |
gattgctgaaccactaccctagtaatgacatacttattaaacatgttatatgagagtgctacatagttgtcatcttcaacgaaagaaacgtta |
193 |
Q |
| |
|
|||||||||||||| | |||||||| |||| |||||| || ||||||||| | ||||||||||| ||||||||||| ||| ||||||| |||| |
|
|
| T |
36433601 |
gattgctgaaccaccatcctagtaacgacagacttatcaaccatgttatacgtgagtgctacattgttgtcatcttgaacaaaagaaatgtta |
36433509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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