View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_high_9 (Length: 423)
Name: NF18899_high_9
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 38657018 - 38656787
Alignment:
| Q |
19 |
catgccacattcagtggactggaattccctcataaagtgcgacctacatttctagtaaatagtacaacctccctctcatatcatataccattgtgtcaca |
118 |
Q |
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| T |
38657018 |
catgccacattcagtggactggaattccctcataaagtgcgacctacatttctagtaaatagtacaacctccctctcatatcatataccattgtgtcaca |
38656919 |
T |
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| Q |
119 |
ccctttaagaaagttattattactttagatttagagtccatttggtactgnnnnnnnnnnnngacaaagtcactatttttaaaattgaataatcaatttt |
218 |
Q |
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| T |
38656918 |
ccctttaagaaagttattattagtttagatttagagtccatttggtactgttttttatttttcacaaagtcactatttttaaaattgaataatcaatttt |
38656819 |
T |
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| Q |
219 |
agaggttttcgtctgtttgttacatattttag |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38656818 |
agaggttttcgtctgtttgttacatattttag |
38656787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 418
Target Start/End: Complemental strand, 38656752 - 38656623
Alignment:
| Q |
288 |
ttgattcagatagaaactattttaagctgctctagaaaattattttttctacggnnnnnnnncataaaatttcatattaaattcatttcttgtt-nnnnn |
386 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
38656752 |
ttgattcaaatagaaactattttaagctgctctagaaaattaatttttcta--aaaaaaaaacataaaatttcatattaaattcatttcttgttaaaaaa |
38656655 |
T |
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| Q |
387 |
nnnttatacttttgcaacaaagaattatctac |
418 |
Q |
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| T |
38656654 |
aaattatacttttgcaacaaagaattatctac |
38656623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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