View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18899_low_1 (Length: 1495)
Name: NF18899_low_1
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_1 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
| [»] scaffold0753 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 305 - 785
Target Start/End: Original strand, 48156176 - 48156649
Alignment:
| Q |
305 |
gtgaaggaggaacataaattactaaaagaaaaacacgacttgtgtaaaggagcaacataaattactaaaaaacctcgtgcaagatatgagattaacaatt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48156176 |
gtgaaggaggaacataaattactaaaagaaaaacacgacttgtgtaaaggagcaacataaattactaaaaaacctcttgcaagatatgagattaacaatt |
48156275 |
T |
|
| Q |
405 |
gattatcgtaggtgatgatactacattgtactgtatctttctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaac |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48156276 |
gattatcgtaggtgatgatactacattgtactgtatctttctttcttgctgcattaccatagagaaaactctatttatttgaggtaaaggatccattaac |
48156375 |
T |
|
| Q |
505 |
aatacttgtgatgttacaccttgataatcttcatttaaacccatcaaaaacttgatgattctatcttctgctctaaagaacaaatccaccatggataaag |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48156376 |
aatacttgtgatgttacaccttgataatcttcatttaaacccatcaaaaacttgatgattctatcttctgctctaaagaacaaatccaccatgga----- |
48156470 |
T |
|
| Q |
605 |
cattaaagcttcaagtgaataaatctctgttctttcaactttcaagttaatgaagtcacacaacatacaagtatcgaaaaaacttaatcttaaaac-ttt |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48156471 |
---taaagcttcaagtgaataaatctctgttctttcaactttcaagttaatgaagtcacacagcatacaagtatcgaaaaaacttaatcttaaaactttt |
48156567 |
T |
|
| Q |
704 |
tagtaaggacaatttttagaattctaaaataaaattgaagataattatgcgaatataataaaaatgcaaacatgaacccaaa |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48156568 |
tagtaaggacaatttttagaattctaaaataaaattgaagataattatgcgaatataataaaaatgcaaacatgaaaccaaa |
48156649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-168
Query Start/End: Original strand, 1149 - 1478
Target Start/End: Original strand, 48157591 - 48157930
Alignment:
| Q |
1149 |
ctttgagcacacaatttttcagatgttaagctaattaaagaagtttctacgtatgaaaccaaaacatgataccgatggtcaaataaacaagcatatattt |
1248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48157591 |
ctttgagcacacaatttttcagatgttaagctaattaaagaagtttctacgtatgaaaccaaaacatgataccgatggtcaaataaacaagcatatattt |
48157690 |
T |
|
| Q |
1249 |
tatatatcaacagtgtgtcaattctgagatttttcatattcttttataatatgacctctgaag----------gttggataagtggccatattcatatac |
1338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48157691 |
tatatatcaacagtgtgtcaattctgagatttttcatattcttttataatatgacctctgaagaggtagtaaggttggataagtggccatattcatatac |
48157790 |
T |
|
| Q |
1339 |
tataacatttgacttttaggagaaaagaaacactgaaaatttccttcaactcttttgcatgcgcattcattccaaatcattcattattagagaattatga |
1438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48157791 |
gataacatttgacttttaggagaaaagaaacactgaaaatttccttcaactcttttgcatgcgcattcattccaaatcattcattattagagaattatga |
48157890 |
T |
|
| Q |
1439 |
tgctctttttatatgactgttataatagtgatgtaacaac |
1478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48157891 |
tgctctttttatatgactgttataatagtgatgtaacaac |
48157930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 3e-64
Query Start/End: Original strand, 970 - 1134
Target Start/End: Original strand, 48157449 - 48157608
Alignment:
| Q |
970 |
gatcaagcaaagaaatactaaaaaagacctgaagagggccagattgattattataatttgacttgccaacttcttctcgcaatttttaaaggcgtttaaa |
1069 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48157449 |
gatcaagcaaagaaatactaaaaaagacctgaagagggccagattgattattataatttgacttgccaa---cttctcgcaatttttaaaggcgtttaaa |
48157545 |
T |
|
| Q |
1070 |
ttagtacaggttaaagtac-agtttagtatatgtattttttgtttcaactttgagcacacaatttt |
1134 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48157546 |
ttagtacaggttaaagtacaattttagtatatgta---tttgtttcaactttgagcacacaatttt |
48157608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 1e-60
Query Start/End: Original strand, 790 - 909
Target Start/End: Original strand, 48157269 - 48157388
Alignment:
| Q |
790 |
gtcaaccatttaactcttacagtattggatgatttgaactatacaattaaatccacacgaagtcaaaaagggaagttcaaaccgaatgtccattttaata |
889 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48157269 |
gtcaaccatttaactcttacagtattggatgatttgaactatacaattaaatccacacgaagtcaaaaagggaagttcaaaccgaatgtccattttaata |
48157368 |
T |
|
| Q |
890 |
ttgggttgaatttgatgatc |
909 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48157369 |
ttgggttgaatttgatgatc |
48157388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 445 - 569
Target Start/End: Original strand, 23418974 - 23419098
Alignment:
| Q |
445 |
ctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgtgatgttacaccttgataatcttcatttaaac |
544 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| || ||||| ||||| |||| |||||| |||||||| || | |
|
|
| T |
23418974 |
ctttcttgctgcataatcatagagaaaactctattgatttgaggcaatggatccattaataaaacttgagatgtaacactttgatattcttcattcaacc |
23419073 |
T |
|
| Q |
545 |
ccatcaaaaacttgatgattctatc |
569 |
Q |
| |
|
| |||| ||| | ||||||||||| |
|
|
| T |
23419074 |
caatcagaaattgaatgattctatc |
23419098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 48156081 - 48156127
Alignment:
| Q |
208 |
atgcttgcggatgctattatcaattataatagagattgttcttctat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48156081 |
atgcttgcggatgctattatcaattataatagagattgttcttctat |
48156127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 3e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 3e-64
Query Start/End: Original strand, 425 - 582
Target Start/End: Complemental strand, 20594169 - 20594012
Alignment:
| Q |
425 |
ctacattgtactgtatctttctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgtgatgttacacc |
524 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20594169 |
ctacattgtattgcatcttcctttcttgctgcattaccatagagaaaactctatttatttgaggcaaaggatccattaacaagacttgtgatgttacacc |
20594070 |
T |
|
| Q |
525 |
ttgataatcttcatttaaacccatcaaaaacttgatgattctatcttctgctctaaag |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
20594069 |
ttgataatcttcatttaaacccatcaaaaatttgatgattctatcttctgctataaag |
20594012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 445 - 569
Target Start/End: Original strand, 4695850 - 4695974
Alignment:
| Q |
445 |
ctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgtgatgttacaccttgataatcttcatttaaac |
544 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| || ||||| ||||| |||| |||||| |||||||| || | |
|
|
| T |
4695850 |
ctttcttgctgcataatcatagagaaaactctattgatttgaggcaatggatccattaataaaacttgagatgtaacactttgatattcttcattcaacc |
4695949 |
T |
|
| Q |
545 |
ccatcaaaaacttgatgattctatc |
569 |
Q |
| |
|
| |||| ||| | ||||||||||| |
|
|
| T |
4695950 |
caatcagaaattgaatgattctatc |
4695974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 441 - 581
Target Start/End: Original strand, 13795974 - 13796117
Alignment:
| Q |
441 |
ctttctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgtgatgttacac-ct--tgataatcttca |
537 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| | || | | ||||||| || | || |||||||||||| |
|
|
| T |
13795974 |
ctttctttcttgttgcattatcatagagaaaaccctatttatttgaggtaaagggtccataagcactgcatgtgatgcaactctctaatgataatcttca |
13796073 |
T |
|
| Q |
538 |
tttaaacccatcaaaaacttgatgattctatcttctgctctaaa |
581 |
Q |
| |
|
||||||| |||||||||| || || |||||||| |||||||| |
|
|
| T |
13796074 |
tttaaacatatcaaaaactgaatcatcctatcttcagctctaaa |
13796117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 971 - 1012
Target Start/End: Complemental strand, 16893428 - 16893387
Alignment:
| Q |
971 |
atcaagcaaagaaatactaaaaaagacctgaagagggccaga |
1012 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
16893428 |
atcaagcaaagaaatactataaaagacctggagagggccaga |
16893387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 415 - 581
Target Start/End: Original strand, 31233763 - 31233929
Alignment:
| Q |
415 |
ggtgatgatactacattgtactgtatctttctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgtg |
514 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||| |||||||| | ||||||||||||||| ||||| ||||||| |
|
|
| T |
31233763 |
ggtgatgatactacattatactgcatctttctttcttgctgcataaccatagagaaaaccctatttatctaaggtaaaggatccatcaacaaaacttgtg |
31233862 |
T |
|
| Q |
515 |
atgttacaccttgataatcttcatttaaacccatcaaaaacttgatgattctatcttctgctctaaa |
581 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
31233863 |
atgttactccttgataatcttcattcaatcccatcagaaacttgatgattatatcttctgctctaaa |
31233929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 971 - 1012
Target Start/End: Complemental strand, 9241843 - 9241802
Alignment:
| Q |
971 |
atcaagcaaagaaatactaaaaaagacctgaagagggccaga |
1012 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
9241843 |
atcaagcaaagaaatactataaaagacctggagagggccaga |
9241802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 412 - 576
Target Start/End: Original strand, 5154425 - 5154589
Alignment:
| Q |
412 |
gtaggtgatgatactacattgtactgtatctttctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatactt |
511 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
5154425 |
gtaggtgaagatactacattttactgcatctttctttcttgctgcattaccatagagaaaaccatgtttatttgaggtaaaggatacatcaacaacactt |
5154524 |
T |
|
| Q |
512 |
gtgatgttacaccttgataatcttcatttaaacccatcaaaaacttgatgattctatcttctgct |
576 |
Q |
| |
|
|||||| || ||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5154525 |
ttgatgtcaccccttgataatcatcattcaatcccattaaaaacttgataattctatcttctgct |
5154589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 439 - 581
Target Start/End: Original strand, 28583938 - 28584080
Alignment:
| Q |
439 |
atctttctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgtgatgttacaccttgataatcttcat |
538 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28583938 |
atctttctttcttgtcgcattatcatagagaaaaccctgcttatttgaggtaaaggatccataagtaatacatgtgatgcaacaccttgataatcttcat |
28584037 |
T |
|
| Q |
539 |
ttaaacccatcaaaaacttgatgattctatcttctgctctaaa |
581 |
Q |
| |
|
|||| | ||||||||| || ||||||||||| ||||||| |
|
|
| T |
28584038 |
ttaatcaattcaaaaactgaattattctatcttcatctctaaa |
28584080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 53; Significance: 1e-20; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 445 - 569
Target Start/End: Complemental strand, 3053 - 2929
Alignment:
| Q |
445 |
ctttcttgctgcattatcatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgtgatgttacaccttgataatcttcatttaaac |
544 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||| || ||||| ||||| |||| |||||| |||||||| || | |
|
|
| T |
3053 |
ctttcttgctgcataatcatagagaaaactctattgatttgaggcgatggatccattaataaaacttgagatgtaacactttgatattcttcattcaacc |
2954 |
T |
|
| Q |
545 |
ccatcaaaaacttgatgattctatc |
569 |
Q |
| |
|
| |||| ||| | ||||||||||| |
|
|
| T |
2953 |
caatcagaaattgaatgattctatc |
2929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 717 - 776
Target Start/End: Complemental strand, 42562742 - 42562683
Alignment:
| Q |
717 |
ttttagaattctaaaataaaattgaagataattatgcgaatataataaaaatgcaaacat |
776 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || ||||||| ||||||| |||||| |
|
|
| T |
42562742 |
ttttagaattataaaataaaattgaagataattttgaaaatataagaaaaatgtaaacat |
42562683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 970 - 1013
Target Start/End: Original strand, 8413585 - 8413628
Alignment:
| Q |
970 |
gatcaagcaaagaaatactaaaaaagacctgaagagggccagat |
1013 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
8413585 |
gatcaagcaaagaaatactataaaagacctggagagggccagat |
8413628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 970 - 1008
Target Start/End: Original strand, 29465231 - 29465269
Alignment:
| Q |
970 |
gatcaagcaaagaaatactaaaaaagacctgaagagggc |
1008 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
29465231 |
gatcaagcaaagaaatactataaaagacctggagagggc |
29465269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 705 - 775
Target Start/End: Original strand, 41762977 - 41763046
Alignment:
| Q |
705 |
agtaaggacaatttttagaattctaaaataaaattgaagataattatgcgaatataataaaaatgcaaaca |
775 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||| |||||| || ||||||||||||||| ||||| |
|
|
| T |
41762977 |
agtaaggacaactttga-aattctaaaataaaattgattataattttggaaatataataaaaatgtaaaca |
41763046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 971 - 1012
Target Start/End: Original strand, 5182 - 5223
Alignment:
| Q |
971 |
atcaagcaaagaaatactaaaaaagacctgaagagggccaga |
1012 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
5182 |
atcaagcaaataaatactataaaagacctggagagggccaga |
5223 |
T |
|
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