View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_10 (Length: 471)
Name: NF18899_low_10
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 4179752 - 4180197
Alignment:
| Q |
13 |
atactgggtccaatgtatc-----tgttaatgaatttgagtttgatcagatatacaatttaatttgtagatgtggnnnnnnncttcaggtgacaaacttc |
107 |
Q |
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| T |
4179752 |
atactgggtccaatgtatcgtacctgttaatgaatttgagtttgatcagatatacaatttaatttgtagatgtggtttttttcttcaggtgacaaacttc |
4179851 |
T |
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| Q |
108 |
aaatgtggaggatactcaatcggcattagttgtagcctcctcttggcagaggttttggtcaaccaaaaattccttaataaatgggtacaaatacacaaca |
207 |
Q |
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| T |
4179852 |
aaatgtggaggatactcaatcggcatttgttgtagcctcctcttggcagaggttttggtaaaccaaaaattccttaataaatgggtacaaatacacaaca |
4179951 |
T |
|
| Q |
208 |
tgttacctacaacctcaaaagaagaaattaacacatccatatttaactaccctcgtctaaaaaatcacaattttctctcttcagaggacttaatcaacca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179952 |
tgttacctacaacctcaaaagaagaaattaacacatccatatttaactaccctcgtctaaaaaatcacaattttctctcttcagaggacttaatcaacca |
4180051 |
T |
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| Q |
308 |
tactcaaaacaaaaacagagttcaaagtattgtattcaaaatcactactaagaatgtaaaatttagcaaagaaatgtggagggaattggccatgttttgc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4180052 |
tactcaaaacaaaaacagagttcaaagtattgtattcaaaatcactactaaaaatgtaaaatttagcaaagaattgtggagggaattggccatgttttgc |
4180151 |
T |
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| Q |
408 |
attgaagaagtggaacaaaagctagacacaaaaataggttctagtt |
453 |
Q |
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| T |
4180152 |
attgaagaagtggaacaaaagctagacacaaaaataggttctagtt |
4180197 |
T |
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