View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_12 (Length: 307)
Name: NF18899_low_12
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 4537552 - 4537850
Alignment:
| Q |
1 |
acatggatcgaaggtaagcggacattaaactgaacggctaaatctttttagaaggtgaaaccaatcctcttaaaacaacattcatagaccnnnnnnncac |
100 |
Q |
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| T |
4537552 |
acatggatcgaaggtaagcggacactaaactgaacggctaaacctttttagatggtgaaaccaatcctcttaaaacaacattcatagacctagaaaacac |
4537651 |
T |
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| Q |
101 |
aacattgctatgcatacccctttgaaatatttgacgaagggctacaaattttggtgctagaaagcaaaaagtgt-nnnnnnnntaatattaaagtatgtt |
199 |
Q |
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| T |
4537652 |
aacattgctatgcatacccttttgaaatatttgaagaagggctacaagttttggtgctagaaagcaaaaagtgtaaaaaaaaaaaatattaaagtatgtt |
4537751 |
T |
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| Q |
200 |
gattgtagaacaagttttctcatgtatgttgattggagttgctaatatattcctctgtcaatgttgttaatttgttcttagttagtattcatgatgatg |
298 |
Q |
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| T |
4537752 |
gattgtagaacaagttttctcatgtatgttgattggagttgctaatatattcctctgtcaatgttgttaatttgttcttagttagtattcatgatgatg |
4537850 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 31252867 - 31252800
Alignment:
| Q |
224 |
tatgttgattggagtt--gctaatatattcctctgtcaatgttgttaatttgttcttagttagtattc |
289 |
Q |
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|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||| |||||| |
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| T |
31252867 |
tatgttgattggagttctgctaatatattcctttgtccatgtttgtaatttgttcttagttggtattc |
31252800 |
T |
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