View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_13 (Length: 305)
Name: NF18899_low_13
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 4483056 - 4483339
Alignment:
| Q |
2 |
acacaattgacacagtcacacaatttggattgttagatcaagattgacaagtccgagtcttaacattggtaagatgagataaagtcggacatttgcagtc |
101 |
Q |
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| T |
4483056 |
acacatttgacacagtcacacaatttggactgttagatcaagattgacaagtccgagtcttaacattggtaagatgagataaagtcggacatttgcagtc |
4483155 |
T |
|
| Q |
102 |
caatctttaacaaacaaaatgaaggatttaatatactttaggacttac-nnnnnnnnnnnnaatgactaaattgaagagggtgataatttgaaatttaan |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4483156 |
caatctttaacaaacaaaatgaagaatttaatatactttaggacttactttttatttttttaatgactaaattgaagagggtgataatttgaaattt--- |
4483252 |
T |
|
| Q |
201 |
nnnnnnnncgaagaagctaaatttgtccactcaaacaggcaccgggaagaattgaacctgagaccctgaggacaatcacactctcag |
287 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| |||||||| |
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| T |
4483253 |
tttttttttgaagaagctaaatttgtccactcaaacaggcaccggaaagaattgaacctgagaccttgaggaggatcagactctcag |
4483339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 20281154 - 20281215
Alignment:
| Q |
211 |
aagaagctaaatttgtccactcaaacaggcaccgggaagaattgaacctgagaccctgagga |
272 |
Q |
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| T |
20281154 |
aagaatctaaattagtccactcaaactggcaccggggaggatcgaacctgggaccttgagga |
20281215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 41487474 - 41487412
Alignment:
| Q |
210 |
gaagaagctaaatttgtccactcaaacaggcaccgggaagaattgaacctgagaccctgagga |
272 |
Q |
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| T |
41487474 |
gaagaagctaaattagcccacctaaattggcaccgggaagaatcgaacctgagaccttgagga |
41487412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 7389002 - 7389059
Alignment:
| Q |
213 |
gaagctaaatttgtccactcaaacaggcaccgggaagaattgaacctgagaccctgag |
270 |
Q |
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| T |
7389002 |
gaagctaaattaatccactcaaattgacaccggggagaattgaacctgagaccttgag |
7389059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 37480190 - 37480113
Alignment:
| Q |
210 |
gaagaagctaaatttgtccactcaaacaggcaccgggaagaattgaacctgagaccctgaggacaatcacactctcag |
287 |
Q |
| |
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|||||||||||||| | |||| |||| || |||||| ||||| |||||||||||| |||||| | ||||||||||| |
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| T |
37480190 |
gaagaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcag |
37480113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 10150831 - 10150884
Alignment:
| Q |
211 |
aagaagctaaatttgtccactcaaacaggcaccgggaagaattgaacctgagac |
264 |
Q |
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||||||||||||| |||||||||||| | |||| | ||||||||||||||||| |
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| T |
10150831 |
aagaagctaaattagtccactcaaactgacacctgagagaattgaacctgagac |
10150884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 15065079 - 15065003
Alignment:
| Q |
211 |
aagaagctaaatttgtccactcaaacaggcaccgggaagaattgaacctgagaccctgaggacaatcacactctcag |
287 |
Q |
| |
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||||||||||||| | |||| |||| | ||||||| | |||||||||||||||| |||||| | ||||||||||| |
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| T |
15065079 |
aagaagctaaattagcccacccaaattgacaccggggaaaattgaacctgagaccttgaggatgagcacactctcag |
15065003 |
T |
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