View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_2 (Length: 1442)
Name: NF18899_low_2
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 749; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 20 - 808
Target Start/End: Original strand, 3238489 - 3239275
Alignment:
| Q |
20 |
tggtgagtgtcacaggtcacagctcgatcgaaactgtgctgtatatgtatacggtaacccttcattttgagaaatggcgagtgtcacagctcgatcaacc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238489 |
tggtgagtgtcacaggtcacagctcgatcgaaactgtgctgtatatgtatacggtaacccttcattttgagaaatggcgagtgtcacagctcgatcaacc |
3238588 |
T |
|
| Q |
120 |
tgtaattgattgagaattaccgtatacatatatagcacagtttcttcttaaagatcagtacatgatcaagttgttacatcaggaaattgaaagcttaacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238589 |
tgtaattgattgagaattaccgtatacatatatagcacagtttcttcttaaagatcagtacatgatcaagttgttacatcaggaaattgaaagcttaacc |
3238688 |
T |
|
| Q |
220 |
gataatgtaatgatcttcatactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgtaagatttatgagatggagaatcatcactg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238689 |
gataatgtaatgatcttcatactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgtaagatttatgagatggagaatcatcactg |
3238788 |
T |
|
| Q |
320 |
aaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaa |
419 |
Q |
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| T |
3238789 |
aaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaa |
3238888 |
T |
|
| Q |
420 |
agtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtatgttttcgata |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238889 |
agtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtatgttttcgata |
3238988 |
T |
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| Q |
520 |
nnnnnnncaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaattttaattttcc |
619 |
Q |
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| T |
3238989 |
tttttttcaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaattttaattttcc |
3239088 |
T |
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| Q |
620 |
taaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttcataataacaa |
719 |
Q |
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| T |
3239089 |
taaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttcataataacaa |
3239188 |
T |
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| Q |
720 |
ttagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaaagttaaatgcacatcctatatcgag |
808 |
Q |
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| T |
3239189 |
ttagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaa--gtaaatacacatcctatatcgag |
3239275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-106
Query Start/End: Original strand, 1209 - 1424
Target Start/End: Original strand, 3239296 - 3239512
Alignment:
| Q |
1209 |
atcacttgttgacgaccagaggaagagaaagcgtactcgtagatttacagaatgagcgttcacagcattaggccgagttctatattttctaaacactaaa |
1308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3239296 |
atcacttgttgacgaccagaggaagagaaagcgtactcgtagatttacagaatgggtgttcacagcattaggccgagttctatattttctaaacactaaa |
3239395 |
T |
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| Q |
1309 |
aaggtgaaagatatgaatgaagatgcttgtaactgtctccaaattttatgggaagaacttgagacagttggttttgatttatcctggttg-aagccttct |
1407 |
Q |
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| T |
3239396 |
aaggtgaaagatatgaatgaagatgcttgtaactgtctccaaatttaatgggaagaacttgagacagttggttttgatttatcctggttgaaagccttct |
3239495 |
T |
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| Q |
1408 |
tatttatctgcgatgag |
1424 |
Q |
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| T |
3239496 |
tatttatctgcgatgag |
3239512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 3e-64
Query Start/End: Original strand, 1210 - 1403
Target Start/End: Original strand, 3243907 - 3244100
Alignment:
| Q |
1210 |
tcacttgttgacgaccagaggaagagaaagcgtactcgtagatttacagaatgagcgttcacagcattaggccgagttctatattttctaaacactaaaa |
1309 |
Q |
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|||| |||||| |||||||||||||||||| ||||| ||| ||||||||||| || |||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
3243907 |
tcacgtgttgaaaaccagaggaagagaaagcatactcttaggtttacagaatgggcattcacagcattaggtcgagttctacattttctaaacaccaaaa |
3244006 |
T |
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| Q |
1310 |
aggtgaaagatatgaatgaagatgcttgtaactgtctccaaattttatgggaagaacttgagacagttggttttgatttatcctggttgaagcc |
1403 |
Q |
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| T |
3244007 |
gggtgaaagatatgaatgaagaagcttgtaatcatctccaaattttatgggaagaacttgagacagtaggttttgatttatcctggttgaagcc |
3244100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 527 - 735
Target Start/End: Original strand, 3243141 - 3243348
Alignment:
| Q |
527 |
caggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatttta---attttcctaaa |
623 |
Q |
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||||||||||||||||||||||||||||| | |||||||| | |||||||||||||| |||||| || | ||||| || ||| ||||| ||||| |
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| T |
3243141 |
caggcggattgttatgaatccaaaagggaacgagaacaactctggttacttgtcattatcaattctttcggttgttgctgatattactgatttttctaaa |
3243240 |
T |
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| Q |
624 |
gggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttcataataacaattag |
723 |
Q |
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| T |
3243241 |
gactggaaaagatatg----taaatcttgagttggctcttactaatcaagccaatgccttgctcacaattgtcaaaggtatgtttcatattaacaattgc |
3243336 |
T |
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| Q |
724 |
ttttacattttt |
735 |
Q |
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|||||||||||| |
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| T |
3243337 |
ttttacattttt |
3243348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
345 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||| |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 980 - 1050
Target Start/End: Original strand, 3243501 - 3243571
Alignment:
| Q |
980 |
atcagaaaccgaacaggagttcaaagaaagtaattattattggagtgtcgacaagttcgtacatttggatg |
1050 |
Q |
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| T |
3243501 |
atcagaaactgaacaggagctcaatgcaagtaattattgctggagtgtcgacaagttcatacatttggatg |
3243571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1142 - 1204
Target Start/End: Original strand, 3243671 - 3243730
Alignment:
| Q |
1142 |
atcaagaagttagcgaggtggatagttcaccagcacaaccaatttttgtcaaggaaatctctt |
1204 |
Q |
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| T |
3243671 |
atcaagaagttagcaagatggat---tcaccagcgcaaccaatttctgtcaaggaaatctctt |
3243730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 3242864 - 3242915
Alignment:
| Q |
239 |
tactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgt |
290 |
Q |
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|||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
3242864 |
tactttataaattaatataattctttctcaatggtgttagagttgaagctgt |
3242915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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