View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_20 (Length: 249)
Name: NF18899_low_20
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 34760022 - 34759825
Alignment:
| Q |
45 |
gggctatgtttattgccgcatatctgtctattaacaaccttaaatgcatcttattaatcttattacagcatgcaattctttttgtaaatggaaatcaata |
144 |
Q |
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| T |
34760022 |
gggctatgtttattgctgcatatctgtctattaacaaccttaaatgcatcttattaatcttattacagcatgcaattctttttgtaaatggaaatcaata |
34759923 |
T |
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| Q |
145 |
ctttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttg |
242 |
Q |
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| T |
34759922 |
ctttggagcaaaggcaaacataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttg |
34759825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 43729184 - 43729054
Alignment:
| Q |
104 |
ttattacagcatgcaattctttttgtaaatggaaatcaatactttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaat |
203 |
Q |
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| T |
43729184 |
ttattgcagcatgcagttgtttttgtaaatggagaacaatactatggagcaaaagcaagcataaatgtgtggacaccaagggtaactgatcaatatgaat |
43729085 |
T |
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| Q |
204 |
ttagcttgtcacagatatgggttattgctgg |
234 |
Q |
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| T |
43729084 |
tcagcttatcacaaatatgggttattgctgg |
43729054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 30928769 - 30928677
Alignment:
| Q |
133 |
tggaaatcaatactttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggt |
225 |
Q |
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| T |
30928769 |
tggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggt |
30928677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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