View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_21 (Length: 246)
Name: NF18899_low_21
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_21 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 29963588 - 29963356
Alignment:
| Q |
4 |
atatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcttgaaaacataaaatcaagtattcaaatgagttgaatttattttct |
103 |
Q |
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| T |
29963588 |
atatagtatatagggggatacgtacactagtgccgtgaaccaatttaatgtagcttgaaaacataaaatcaagtattcaaatgagttgaatttattttct |
29963489 |
T |
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| Q |
104 |
tcactannnnnnnagaaacatagaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaagga |
203 |
Q |
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| T |
29963488 |
taactatttttttagaaacatagaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgtcaaaaagga |
29963389 |
T |
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| Q |
204 |
aataagtaagttgtagtgagttattctttagta |
236 |
Q |
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| T |
29963388 |
aataagtaagttgtagtgagttattctttagta |
29963356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2038565 - 2038806
Alignment:
| Q |
1 |
aatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcttgaaaacataaaatcaagtattcaaatgagttgaatttattt |
100 |
Q |
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| T |
2038565 |
aatatatagtatatagggtgatacgtatactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattt |
2038664 |
T |
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| Q |
101 |
t-cttcactannnnnnn-----agaaacatagaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgt |
194 |
Q |
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| T |
2038665 |
ttcttaactattagaaattactagaaacatagaagaggttcagattcgactaaaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtgt |
2038764 |
T |
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| Q |
195 |
caaaaaggaaataagtaagttgtagtgagttattctttagta |
236 |
Q |
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| T |
2038765 |
caaaaaggaaataagtaagttgtagtgagttattctttagta |
2038806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35158 - 34916
Alignment:
| Q |
1 |
aatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcttgaaaacataaaatcaagtattcaaatgagttgaatttattt |
100 |
Q |
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| T |
35158 |
aatatatagtatatagggtgatacgtacactagtgccgtgaaccaatttaatgtagcctgaaaacataaaatcaagtattcaaatgagttgaatttattt |
35059 |
T |
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| Q |
101 |
tcttcactannnnnnn-----agaaacata--gaagaggttcaggttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtg |
193 |
Q |
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|||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35058 |
tcttaactattagaaattactagaaacatatggaagaggttcatgttcgactagaggaaaatgaattatacatgttaaaataagttgaaactgtgtcgtg |
34959 |
T |
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| Q |
194 |
tcaaaaaggaaataagtaagttgtagtgagttattctttagta |
236 |
Q |
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| T |
34958 |
tcaaaaaggaaataagtaagttgtagtgagttattctttagta |
34916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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