View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_23 (Length: 231)
Name: NF18899_low_23
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 22192759 - 22192951
Alignment:
| Q |
21 |
gtggttgtgatgctaaagtatgccaaaatcaaggaagaaggtgatatccctacatatgtttttgtagttgcatgtgtatctcctaagattgatttctgtt |
120 |
Q |
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| T |
22192759 |
gtggttgtgatgctaaagtatgccaaaatcaaggaagaaggtgatatccctacatatgtttttgtagttgcatgtgtatctcctaagattgacttctgtt |
22192858 |
T |
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| Q |
121 |
gtcatcaaacacttattattcaactaaaaaagtgtttcaaacacttattgtttcactaagttgtacatcaatgaggacattcatgatatcaat |
213 |
Q |
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| T |
22192859 |
gttatcaaacaattattattcaactaaaaaagtgtttcaaacacttattgtttcactaagttgtccatcaatgagggcattcatgatatcaat |
22192951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 27133530 - 27133474
Alignment:
| Q |
150 |
aagtgtttcaaacacttattgtttcactaagttgtacatcaatgaggacattcatga |
206 |
Q |
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| T |
27133530 |
aagtgtttcaaatacttatactttcacaaagttgtacatcaatgaggacattcatga |
27133474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 27133679 - 27133620
Alignment:
| Q |
21 |
gtggttgtgatgctaaagtatgccaaaatcaaggaagaaggtgatatccctacatatgtt |
80 |
Q |
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|||||||||||||| |||||| |||| ||||||||||||||| || |||||||| |||| |
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| T |
27133679 |
gtggttgtgatgctgaagtataccaagatcaaggaagaaggttttacccctacatctgtt |
27133620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 26410589 - 26410645
Alignment:
| Q |
150 |
aagtgtttcaaacacttattgtttcactaagttgtacatcaatgaggacattcatga |
206 |
Q |
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| T |
26410589 |
aagtgtttcaaatacttatactttcacaaagttgtacatcaatgaggacattcatga |
26410645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 26410440 - 26410499
Alignment:
| Q |
21 |
gtggttgtgatgctaaagtatgccaaaatcaaggaagaaggtgatatccctacatatgtt |
80 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||| || |||||||| |||| |
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| T |
26410440 |
gtggttgtgatgctgaagtatgccaagatcaaggaagaaggttttacccctacatctgtt |
26410499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 24028229 - 24028178
Alignment:
| Q |
151 |
agtgtttcaaacacttattgtttcactaagttgtacatcaatgaggacattc |
202 |
Q |
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| T |
24028229 |
agtgtttcaaacacttattcttacactaagttgttcatcaatgctgacattc |
24028178 |
T |
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