View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_26 (Length: 205)
Name: NF18899_low_26
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 43395038 - 43395171
Alignment:
| Q |
1 |
tctgctttcacctttttggccccaatgctacaaaccataataaaacaaaaatatattaaaatatgtaaagcaacatatatagtgtgcacctgatgaatta |
100 |
Q |
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| T |
43395038 |
tctgctttcacctttttggccccaatgctgcaaaccataataaaacaaaaatatattaaaatatgtaaagcaacatatatagtgtgcacctgatgaatta |
43395137 |
T |
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| Q |
101 |
taatatataataatttactcaatcctaattactg |
134 |
Q |
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| T |
43395138 |
taatatataataatttactcaatcctaattactg |
43395171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 43407256 - 43407389
Alignment:
| Q |
1 |
tctgctttcacctttttggccccaatgctacaaaccataataaaacaaaaatatattaaaatatgtaaagcaacatatatagtgtgcacctgatgaatta |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407256 |
tctgctttcacctttttggccccaatgctgcaaaccataataaaacaaaaatatattaaaatatgtaaagcaacatatatagtgtgcacctgatgaatta |
43407355 |
T |
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| Q |
101 |
taatatataataatttactcaatcctaattactg |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43407356 |
taatatataataatttactcaatcctaattactg |
43407389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 31731769 - 31731799
Alignment:
| Q |
158 |
ttgttttgaaaaagacaccagacattaatct |
188 |
Q |
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| T |
31731769 |
ttgttttgaaaaagacaccagacattaatct |
31731799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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