View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_3 (Length: 1145)
Name: NF18899_low_3
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 3238779 - 3239275
Alignment:
| Q |
13 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238779 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
3238878 |
T |
|
| Q |
113 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238879 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
3238978 |
T |
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| Q |
213 |
gttttcgatannnnnnncaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatt |
312 |
Q |
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| T |
3238979 |
gttttcgatatttttttcaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatt |
3239078 |
T |
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| Q |
313 |
ttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttc |
412 |
Q |
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| T |
3239079 |
ttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttc |
3239178 |
T |
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| Q |
413 |
ataataacaattagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaaagttaaatgcacatcctatatcgag |
511 |
Q |
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| T |
3239179 |
ataataacaattagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaa--gtaaatacacatcctatatcgag |
3239275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 912 - 1127
Target Start/End: Original strand, 3239296 - 3239512
Alignment:
| Q |
912 |
atcacttgttgacgaccagaggaagagaaagcgtactcgtagatttacagaatgagcgttcacagcattaggccgagttctatattttctaaacactaaa |
1011 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3239296 |
atcacttgttgacgaccagaggaagagaaagcgtactcgtagatttacagaatgggtgttcacagcattaggccgagttctatattttctaaacactaaa |
3239395 |
T |
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| Q |
1012 |
aaggtgaaagatatgaatgaagatgcttgtaactgtctccaaattttatgggaagaacttgagacagttggttttgatttatcctggttg-aagccttct |
1110 |
Q |
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| T |
3239396 |
aaggtgaaagatatgaatgaagatgcttgtaactgtctccaaatttaatgggaagaacttgagacagttggttttgatttatcctggttgaaagccttct |
3239495 |
T |
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| Q |
1111 |
tatttatctgcgatgag |
1127 |
Q |
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| T |
3239496 |
tatttatctgcgatgag |
3239512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 913 - 1106
Target Start/End: Original strand, 3243907 - 3244100
Alignment:
| Q |
913 |
tcacttgttgacgaccagaggaagagaaagcgtactcgtagatttacagaatgagcgttcacagcattaggccgagttctatattttctaaacactaaaa |
1012 |
Q |
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|||| |||||| |||||||||||||||||| ||||| ||| ||||||||||| || |||||||||||||| ||||||||| ||||||||||||| |||| |
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| T |
3243907 |
tcacgtgttgaaaaccagaggaagagaaagcatactcttaggtttacagaatgggcattcacagcattaggtcgagttctacattttctaaacaccaaaa |
3244006 |
T |
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| Q |
1013 |
aggtgaaagatatgaatgaagatgcttgtaactgtctccaaattttatgggaagaacttgagacagttggttttgatttatcctggttgaagcc |
1106 |
Q |
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| T |
3244007 |
gggtgaaagatatgaatgaagaagcttgtaatcatctccaaattttatgggaagaacttgagacagtaggttttgatttatcctggttgaagcc |
3244100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 230 - 438
Target Start/End: Original strand, 3243141 - 3243348
Alignment:
| Q |
230 |
caggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatttta---attttcctaaa |
326 |
Q |
| |
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||||||||||||||||||||||||||||| | |||||||| | |||||||||||||| |||||| || | ||||| || ||| ||||| ||||| |
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| T |
3243141 |
caggcggattgttatgaatccaaaagggaacgagaacaactctggttacttgtcattatcaattctttcggttgttgctgatattactgatttttctaaa |
3243240 |
T |
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| Q |
327 |
gggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttcataataacaattag |
426 |
Q |
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| |||| |||||||| |||||||||||||||||||||| |||||| || ||||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
3243241 |
gactggaaaagatatg----taaatcttgagttggctcttactaatcaagccaatgccttgctcacaattgtcaaaggtatgtttcatattaacaattgc |
3243336 |
T |
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| Q |
427 |
ttttacattttt |
438 |
Q |
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|||||||||||| |
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| T |
3243337 |
ttttacattttt |
3243348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
48 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
121 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||| |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 683 - 753
Target Start/End: Original strand, 3243501 - 3243571
Alignment:
| Q |
683 |
atcagaaaccgaacaggagttcaaagaaagtaattattattggagtgtcgacaagttcgtacatttggatg |
753 |
Q |
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||||||||| ||||||||| |||| | ||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
3243501 |
atcagaaactgaacaggagctcaatgcaagtaattattgctggagtgtcgacaagttcatacatttggatg |
3243571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 845 - 907
Target Start/End: Original strand, 3243671 - 3243730
Alignment:
| Q |
845 |
atcaagaagttagcgaggtggatagttcaccagcacaaccaatttttgtcaaggaaatctctt |
907 |
Q |
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|||||||||||||| || ||||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
3243671 |
atcaagaagttagcaagatggat---tcaccagcgcaaccaatttctgtcaaggaaatctctt |
3243730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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