View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_4 (Length: 667)
Name: NF18899_low_4
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 652
Target Start/End: Original strand, 3017515 - 3018170
Alignment:
| Q |
1 |
aatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtgtta |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017515 |
aatgtgtgaacatgcttcttatcagctatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtgtta |
3017614 |
T |
|
| Q |
101 |
tcgaggaaagtgacgatatatctctcggcttactctatccaatcttagattgtgtaaagaaagacaataaggttggtgtttggaaatttaatctcattct |
200 |
Q |
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| T |
3017615 |
ttgaggaaagtgacgatatatctctcggcttactctatccaatcttagattgtgtaaagaaagacaataaggttggtgtttggaaatttaatctcattct |
3017714 |
T |
|
| Q |
201 |
ttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017715 |
ttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgc |
3017814 |
T |
|
| Q |
301 |
caattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctgtgaatatgttgggtactatggtt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017815 |
caattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctgtgaatatgttgggtactatggtt |
3017914 |
T |
|
| Q |
401 |
gatgttcttgactcaataatcatgcagtgaactttggtgcaaatgatgcatcaatcatgtgggaaacttcggtgcttttggttaagaattttttgtgcca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3017915 |
gatgttcttgactcaataatcatgcagtgaactttggtgcaaatgatgcatcaatcatgtgggaaatttcggtgcttttggttaagaattttttgtgcca |
3018014 |
T |
|
| Q |
501 |
aattagttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgta----tgtttatagatattgccaaatttctttgcttgattattc |
596 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3018015 |
aattagttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgtatgtttgtttatagatattgccaaatttctttgcttgattattc |
3018114 |
T |
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| Q |
597 |
taaaaggtaagtttcatatgcaattcatctagagaatattctaattacatcctatg |
652 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3018115 |
taaaaggtaagtttcatatgcaattcatctagataatattctaattacatcctatg |
3018170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 161 - 617
Target Start/End: Original strand, 3020776 - 3021251
Alignment:
| Q |
161 |
aagacaataaggttggtgtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttata |
260 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3020776 |
aagacaataagggtggagtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttata |
3020875 |
T |
|
| Q |
261 |
attgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatac |
360 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
3020876 |
attgtcgtgatcactatcattatgattcaggttgtttcaccaaatgctcgaaagttgggggaaagtgttcttcaaaagtgtgcaacaaggcttataatac |
3020975 |
T |
|
| Q |
361 |
ctatttgcggcatgctgtgaatatgttgggtactatggttg---------atgttcttgactcaataatcatgcagtgaactttggtgcaa-atgat--- |
447 |
Q |
| |
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|| ||||||| ||| |||||||||||||||||||||||||| ||||||||| |||| | |||||| | ||||||||||||| ||| | |
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| T |
3020976 |
ctgtttgcggtatgttgtgaatatgttgggtactatggttgattataatcatgttcttgcctcagtgatcatgtggcaaactttggtgcaatatgttcta |
3021075 |
T |
|
| Q |
448 |
gcatcaatcatgtgggaaacttcggtgcttttggttaagaattttttgtgccaaattagttg-tttatctttaaaaatattttct-------agttaaga |
539 |
Q |
| |
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| ||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
3021076 |
atagcaatcatgtggtgaacttcagtgc---tggctaagaattttttgtgccaaattagttgttttatctttaaaaatatttactacttaagagttaaga |
3021172 |
T |
|
| Q |
540 |
ccaaacttcatatatgtatgtttat--agatattgccaaatttctttgcttgattattctaaaaggtaagtttcatatgc |
617 |
Q |
| |
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| T |
3021173 |
ccaaacttcatat-tgtatgtttatacagatattgccaaaagtcttttcttgactattctaaaaggtaagttgcatatgc |
3021251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 3020649 - 3020776
Alignment:
| Q |
5 |
tgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtgttatcga |
104 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| | || |
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| T |
3020649 |
tgtgaacatgcttcttatcagctctgtttgaaactttcagagaacatcatccagaaattgttttctcgtccatggaaaccataatgatccgtgtttttga |
3020748 |
T |
|
| Q |
105 |
ggaaagtgacgatatatctctcggctta |
132 |
Q |
| |
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||||||||||||||||||||| |||||| |
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| T |
3020749 |
ggaaagtgacgatatatctcttggctta |
3020776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 3033480 - 3033830
Alignment:
| Q |
1 |
aatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggcccgtgtta |
100 |
Q |
| |
|
|||||||||||||| |||| | || || |||||||||||||||| ||| |||||||||| | ||||||||||||||||||| | |||||| || | |
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| T |
3033480 |
aatgtgtgaacatggttctaagcatctctgtttgaaactttcagggaacatcatccagataatgttttctcgtccatggaaactataatgatcctctgtc |
3033579 |
T |
|
| Q |
101 |
tcgaggaaagtgacgatatatctctcggcttactctatccaatcttagattgtgtaaagaaagacaataaggttggtgtttggaa--atttaatctcatt |
198 |
Q |
| |
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| || |||||||| || |||||| | |||||||| |||||||||||| ||||||||||||||||| ||||||||||||| || ||| | ||||| |
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| T |
3033580 |
tagaagaaagtgaagaaatatctgatgacttactctctccaatcttagacagtgtaaagaaagacaatgaggttggtgtttgtaattttttcgtttcatt |
3033679 |
T |
|
| Q |
199 |
ctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggtttc |
298 |
Q |
| |
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||| ||||||| | |||||| | |||||||||| | ||||||||||| ||| |||||||||||| || || |||| |||||||||| ||||| |
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| T |
3033680 |
cttgttaataggtcgtgattgttaaactgaaacat-----atttcattatgaatttcttataattgtcatggctgctgtcatcatgattcaggaggtttt |
3033774 |
T |
|
| Q |
299 |
gccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagctta |
354 |
Q |
| |
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||||||||||||||||||||| |||| || ||| ||| |||||||||| ||||| |
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| T |
3033775 |
gccaattgctcgaaagttgggggaaagagtccttgaaagttgtgcaacaaggctta |
3033830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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