View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18899_low_7 (Length: 555)

Name: NF18899_low_7
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18899_low_7
NF18899_low_7
[»] chr5 (33 HSPs)
chr5 (16-544)||(8749596-8750124)
chr5 (432-548)||(31588318-31588435)
chr5 (427-538)||(18999622-18999733)
chr5 (432-541)||(18999368-18999477)
chr5 (432-542)||(87239-87349)
chr5 (423-541)||(31176500-31176618)
chr5 (435-548)||(3935666-3935779)
chr5 (432-542)||(8648043-8648153)
chr5 (422-519)||(4187837-4187934)
chr5 (429-548)||(13987281-13987401)
chr5 (432-511)||(18340659-18340738)
chr5 (432-541)||(8750339-8750448)
chr5 (450-523)||(18339093-18339166)
chr5 (423-541)||(3406839-3406956)
chr5 (426-548)||(30415456-30415577)
chr5 (432-509)||(22231171-22231248)
chr5 (432-538)||(3406461-3406567)
chr5 (432-541)||(16284276-16284385)
chr5 (423-489)||(15978554-15978620)
chr5 (423-489)||(18339239-18339305)
chr5 (424-509)||(119004-119089)
chr5 (432-497)||(31932817-31932882)
chr5 (427-519)||(119959-120051)
chr5 (432-508)||(30351716-30351792)
chr5 (429-477)||(31588206-31588254)
chr5 (432-508)||(37813377-37813453)
chr5 (427-518)||(87016-87107)
chr5 (423-509)||(3406696-3406782)
chr5 (432-509)||(119186-119263)
chr5 (432-509)||(718235-718312)
chr5 (432-521)||(20892544-20892632)
chr5 (483-548)||(35373501-35373566)
chr5 (475-548)||(38834751-38834823)
[»] chr3 (32 HSPs)
chr3 (427-547)||(22814293-22814413)
chr3 (434-548)||(50732229-50732343)
chr3 (434-548)||(50780512-50780626)
chr3 (432-541)||(43933442-43933551)
chr3 (423-545)||(9218489-9218610)
chr3 (432-542)||(13637478-13637587)
chr3 (424-538)||(44504368-44504482)
chr3 (432-541)||(13637759-13637868)
chr3 (432-545)||(51471337-51471450)
chr3 (438-541)||(44504100-44504203)
chr3 (432-502)||(45728335-45728405)
chr3 (425-538)||(25770316-25770429)
chr3 (423-520)||(48867643-48867740)
chr3 (425-548)||(38485692-38485814)
chr3 (432-542)||(25770694-25770804)
chr3 (432-546)||(34743444-34743558)
chr3 (432-509)||(132070-132147)
chr3 (427-541)||(26741283-26741393)
chr3 (424-541)||(37172075-37172192)
chr3 (432-540)||(43933708-43933815)
chr3 (425-504)||(22814597-22814676)
chr3 (455-541)||(9217845-9217931)
chr3 (432-509)||(48868598-48868675)
chr3 (423-510)||(44504258-44504345)
chr3 (432-509)||(25770496-25770573)
chr3 (432-541)||(37172455-37172564)
chr3 (466-523)||(51755911-51755968)
chr3 (432-509)||(7248500-7248577)
chr3 (432-546)||(33225490-33225604)
chr3 (432-510)||(33226932-33227010)
chr3 (466-508)||(54588493-54588535)
chr3 (432-520)||(51507919-51508007)
[»] chr2 (26 HSPs)
chr2 (423-545)||(21182300-21182422)
chr2 (432-541)||(2191219-2191328)
chr2 (432-541)||(3691368-3691477)
chr2 (423-542)||(2517406-2517525)
chr2 (427-522)||(21217319-21217414)
chr2 (432-522)||(21264993-21265083)
chr2 (432-541)||(24093158-24093267)
chr2 (432-523)||(21216925-21217016)
chr2 (432-523)||(21265386-21265477)
chr2 (433-523)||(7083525-7083615)
chr2 (432-541)||(32114450-32114559)
chr2 (450-548)||(10706623-10706719)
chr2 (427-541)||(24093535-24093649)
chr2 (432-541)||(21267347-21267456)
chr2 (441-546)||(3691094-3691199)
chr2 (432-541)||(32114168-32114276)
chr2 (432-523)||(32860816-32860907)
chr2 (427-519)||(23222864-23222956)
chr2 (426-542)||(39729584-39729700)
chr2 (423-497)||(39600765-39600839)
chr2 (423-509)||(24093322-24093408)
chr2 (424-509)||(2036614-2036699)
chr2 (432-541)||(3624893-3625001)
chr2 (432-509)||(39947097-39947174)
chr2 (432-508)||(10708025-10708101)
chr2 (473-509)||(44930026-44930062)
[»] chr8 (30 HSPs)
chr8 (426-548)||(26997841-26997963)
chr8 (423-539)||(13315195-13315311)
chr8 (432-541)||(6297464-6297573)
chr8 (432-540)||(9800323-9800431)
chr8 (427-541)||(10047476-10047589)
chr8 (467-548)||(12489265-12489346)
chr8 (432-541)||(16662170-16662279)
chr8 (428-548)||(26720319-26720439)
chr8 (426-541)||(17914193-17914308)
chr8 (427-541)||(6298014-6298128)
chr8 (432-548)||(9800041-9800157)
chr8 (432-548)||(17915479-17915594)
chr8 (432-537)||(21006105-21006210)
chr8 (423-541)||(6297841-6297959)
chr8 (432-542)||(10047856-10047966)
chr8 (433-523)||(26243392-26243482)
chr8 (433-508)||(16662483-16662558)
chr8 (436-538)||(7344838-7344940)
chr8 (432-546)||(40304686-40304800)
chr8 (423-509)||(44024391-44024477)
chr8 (432-528)||(12489519-12489614)
chr8 (435-541)||(44024230-44024336)
chr8 (427-512)||(34614015-34614099)
chr8 (426-509)||(11089305-11089388)
chr8 (423-509)||(21005960-21006046)
chr8 (425-521)||(44802177-44802272)
chr8 (452-519)||(36155293-36155360)
chr8 (432-519)||(44148579-44148666)
chr8 (423-521)||(44803562-44803660)
chr8 (425-509)||(4694443-4694527)
[»] chr7 (31 HSPs)
chr7 (432-548)||(20543913-20544029)
chr7 (432-542)||(11974666-11974776)
chr7 (432-542)||(32092230-32092340)
chr7 (438-544)||(22948854-22948960)
chr7 (427-539)||(18152753-18152865)
chr7 (432-523)||(17075614-17075705)
chr7 (428-541)||(20544290-20544402)
chr7 (432-545)||(28852695-28852808)
chr7 (435-523)||(6621113-6621200)
chr7 (426-522)||(17075215-17075311)
chr7 (432-541)||(44803611-44803720)
chr7 (432-544)||(32092505-32092617)
chr7 (423-509)||(16755644-16755729)
chr7 (432-538)||(28854679-28854785)
chr7 (430-508)||(30938595-30938673)
chr7 (451-541)||(42750097-42750187)
chr7 (425-540)||(10466759-10466874)
chr7 (430-545)||(11975038-11975152)
chr7 (423-509)||(30939575-30939661)
chr7 (432-541)||(23548986-23549095)
chr7 (450-508)||(27311060-27311118)
chr7 (432-541)||(5029733-5029841)
chr7 (432-509)||(27310049-27310126)
chr7 (423-541)||(28838348-28838463)
chr7 (432-495)||(23548056-23548119)
chr7 (486-545)||(44803382-44803441)
chr7 (427-509)||(18443620-18443701)
chr7 (432-509)||(11992716-11992793)
chr7 (425-546)||(12933035-12933156)
chr7 (435-547)||(49053853-49053966)
chr7 (438-546)||(12908389-12908497)
[»] chr6 (17 HSPs)
chr6 (432-548)||(17157548-17157664)
chr6 (432-548)||(14712978-14713094)
chr6 (432-523)||(211717-211809)
chr6 (432-519)||(211443-211530)
chr6 (432-548)||(7645954-7646070)
chr6 (427-509)||(5974008-5974090)
chr6 (427-509)||(8710351-8710433)
chr6 (424-509)||(4510182-4510267)
chr6 (432-499)||(17157854-17157921)
chr6 (450-548)||(21113049-21113147)
chr6 (423-509)||(14712823-14712909)
chr6 (432-538)||(1869453-1869559)
chr6 (432-509)||(19595660-19595737)
chr6 (432-546)||(25932359-25932476)
chr6 (432-510)||(5975834-5975911)
chr6 (467-541)||(20522135-20522209)
chr6 (432-541)||(25932085-25932190)
[»] scaffold0009 (2 HSPs)
scaffold0009 (425-548)||(108094-108217)
scaffold0009 (432-541)||(107724-107833)
[»] chr4 (47 HSPs)
chr4 (432-541)||(3296545-3296654)
chr4 (432-548)||(51906791-51906907)
chr4 (432-541)||(7118143-7118252)
chr4 (432-541)||(48553898-48554007)
chr4 (432-541)||(26168371-26168482)
chr4 (426-544)||(29691521-29691639)
chr4 (427-541)||(29691891-29692005)
chr4 (423-541)||(51906413-51906531)
chr4 (432-541)||(3296923-3297032)
chr4 (432-541)||(34129279-34129388)
chr4 (432-541)||(41510070-41510179)
chr4 (451-547)||(30608266-30608362)
chr4 (425-541)||(30608612-30608728)
chr4 (432-548)||(35166838-35166954)
chr4 (432-538)||(48760097-48760203)
chr4 (432-548)||(1791520-1791637)
chr4 (450-541)||(30952980-30953071)
chr4 (432-523)||(38759706-38759797)
chr4 (435-544)||(52398684-52398794)
chr4 (424-509)||(17288384-17288469)
chr4 (451-548)||(26168014-26168110)
chr4 (432-519)||(54142327-54142414)
chr4 (432-542)||(34128996-34129106)
chr4 (432-508)||(17287489-17287565)
chr4 (432-520)||(49426352-49426440)
chr4 (430-509)||(35469075-35469153)
chr4 (434-541)||(56106440-56106547)
chr4 (432-509)||(1791150-1791227)
chr4 (434-523)||(5544788-5544877)
chr4 (453-547)||(25917009-25917105)
chr4 (438-523)||(26984152-26984237)
chr4 (421-509)||(789886-789973)
chr4 (428-496)||(10005456-10005524)
chr4 (465-545)||(30047991-30048071)
chr4 (465-545)||(30062332-30062412)
chr4 (432-516)||(34294454-34294536)
chr4 (423-506)||(3296710-3296793)
chr4 (423-509)||(10580033-10580119)
chr4 (432-546)||(48759814-48759926)
chr4 (432-509)||(54168834-54168911)
chr4 (432-508)||(5545023-5545099)
chr4 (432-480)||(19310789-19310837)
chr4 (423-509)||(29691750-29691836)
chr4 (424-509)||(38026118-38026202)
chr4 (432-509)||(49424456-49424533)
chr4 (432-508)||(1317504-1317579)
chr4 (423-519)||(54143502-54143598)
[»] chr1 (27 HSPs)
chr1 (432-548)||(5683163-5683279)
chr1 (432-547)||(50359412-50359527)
chr1 (432-548)||(6751325-6751442)
chr1 (432-541)||(48155258-48155367)
chr1 (432-551)||(18179881-18180000)
chr1 (432-541)||(5172747-5172856)
chr1 (432-541)||(9880486-9880595)
chr1 (423-548)||(9880762-9880887)
chr1 (432-541)||(18180257-18180366)
chr1 (432-548)||(3591309-3591425)
chr1 (432-542)||(19895402-19895512)
chr1 (423-548)||(50359118-50359242)
chr1 (425-509)||(1500992-1501076)
chr1 (432-548)||(5683533-5683649)
chr1 (432-548)||(31436355-31436471)
chr1 (432-547)||(48154976-48155090)
chr1 (432-538)||(4288422-4288523)
chr1 (423-541)||(6751040-6751158)
chr1 (439-538)||(47541527-47541626)
chr1 (428-538)||(19976162-19976272)
chr1 (423-510)||(18180045-18180132)
chr1 (467-542)||(19895778-19895853)
chr1 (423-509)||(3591175-3591261)
chr1 (423-509)||(45665952-45666038)
chr1 (432-509)||(37717807-37717883)
chr1 (432-509)||(45664689-45664766)
chr1 (432-521)||(42723254-42723347)
[»] scaffold0063 (2 HSPs)
scaffold0063 (431-547)||(34793-34909)
scaffold0063 (432-540)||(35172-35280)
[»] scaffold0933 (1 HSPs)
scaffold0933 (432-542)||(493-603)
[»] scaffold0177 (1 HSPs)
scaffold0177 (426-506)||(25856-25936)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 544
Target Start/End: Original strand, 8749596 - 8750124
Alignment:
Q  16 gaaactttacctaaatcttttcagaaaactcgaactaagttttccggtaacaattcattcatgaatcataactagttgagtttaaaaatcatgtatcgtt 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8749596 gaaactttaccgaaatcttttcagaaaactcgaactaagttttccggtaacaattcattcatgaataataactagttgagtttaaaaatcatgtatcgtt 8749695  T
Q  116 agatctttaaattagaaagcctaatttgggtannnnnnnnnacaagttgatctgagtaaattattttcaagcagatctggataatttctgaagaggcttg 215  Q
    ||||||||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8749696 agatctttaaattagaaagcctaatttaggtatttttttttacaagttgatctgagtaaattattttcaagcagatctggataatttctgaagaggcttg 8749795  T
Q  216 aattgaaaacttattaaatttgatgaactatttcataacatatttctacattctacttacgtttgttcttgcattttaatattgcatgatctcgcaatat 315  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8749796 aattgaaaacttattaaatttgatgaactatttcataacatgtttctacattctacttacgtttgttcttgcattttaatattgcatgatcttgcaatat 8749895  T
Q  316 tttgaagatttcgggaagctccatcgaaatctggaaagcatcaattttttaccacaaattattgtcgttcttccnnnnnnnnnnnnnnnnnnttattttc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||    
T  8749896 tttgaagatttcgggaagctccatcgaaatctggaaagcatcaattttttaccacaaattattgtcgttcttccaaaaaaaaaaaattaaaattattttc 8749995  T
Q  416 tcgattgattttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaaca 515  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||     
T  8749996 tcgattgattttagggttaaatatgtttttaattcttacattttgcgcccctttgaataataatccctacatttcattaaatatttttaaaatcgtaacg 8750095  T
Q  516 ttttatctttgttttcaaaattagtctct 544  Q
    ||||||||| ||| |||||||||||||||    
T  8750096 ttttatcttcgttatcaaaattagtctct 8750124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 31588435 - 31588318
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcg-cccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgtttt 530  Q
    ||||||||||||||| | ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||  ||| |    
T  31588435 ttaaatatgtttttagtccttacattttgcgtcccctttgaagaatagtccctacatttcattaaatatttttaaaatcctaacattttatctccgttat 31588336  T
Q  531 caaaattagtctctgctg 548  Q
    ||||||||||| ||||||    
T  31588335 caaaattagtccctgctg 31588318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 427 - 538
Target Start/End: Complemental strand, 18999733 - 18999622
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    |||| ||||||||||||||| | ||||||||||||  |  |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  18999733 tagggttaaatatgtttttagtccttacattttgcttcattttgaagaatagtccatacatttcattaaatatttttaaaatcctcacattttatctttg 18999634  T
Q  527 ttttcaaaatta 538  Q
    || |||||||||    
T  18999633 ttatcaaaatta 18999622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 18999368 - 18999477
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||||||||| | | |||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||  ||| ||    
T  18999368 ttaaatatgtttttagtccttacattttgcactcttttgaagaatagtccatacatttcattaaatatttttaaaatcctctcattttatctccgttatc 18999467  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  18999468 aaaattagtc 18999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 432 - 542
Target Start/End: Complemental strand, 87349 - 87239
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||| |||||| | ||||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  87349 ttaaatatgtttttagtccttatattttgtgtccctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatc 87250  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  87249 aaaattagtct 87239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 423 - 541
Target Start/End: Original strand, 31176500 - 31176618
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    |||| ||| ||||||||||||||| | |||| |||||||| ||||||||| || ||||||||||||||||||||| ||||||||||| | | ||||||||    
T  31176500 atttaagggttaaatatgtttttagtccttatattttgcgtccctttgaagaacagtccatacatttcattaaatgtttttaaaatcgtcatattttatc 31176599  T
Q  523 tttgttttcaaaattagtc 541  Q
       ||| ||||||||||||    
T  31176600 cccgttatcaaaattagtc 31176618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 435 - 548
Target Start/End: Complemental strand, 3935779 - 3935666
Alignment:
Q  435 aatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaa 534  Q
    ||||| |||||| | ||| |||||| ||| |||||||| |||| ||| ||||||||||||| | ||||||||||| | |||||||||||||||| | |||    
T  3935779 aatatatttttagtcctttcattttacgctcctttgaagaataatccctacatttcattaattgtttttaaaatcctcacattttatctttgttattaaa 3935680  T
Q  535 attagtctctgctg 548  Q
    ||||||||||||||    
T  3935679 attagtctctgctg 3935666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 432 - 542
Target Start/End: Complemental strand, 8648153 - 8648043
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||| ||||| | ||||||||||||| || || ||| |||||||  ||||||||||||||||||||||||||| | ||||||| |||  ||| ||    
T  8648153 ttaaatatgattttagtccttacattttgcgtcctttggaagaatagtctttacatttcattaaatatttttaaaatcctcacattttttctccgttatc 8648054  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  8648053 aaaattagtct 8648043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 519
Target Start/End: Complemental strand, 4187934 - 4187837
Alignment:
Q  422 gattttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    |||| |||| ||||||||||||||| | | ||||||||||||  |||| ||||||||||| ||||||||| ||||||||||||||||| | |||||||    
T  4187934 gattctagggttaaatatgtttttagtccctacattttgcgcaactttaaataatagtccttacatttcaataaatatttttaaaatcctcacatttt 4187837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 548
Target Start/End: Original strand, 13987281 - 13987401
Alignment:
Q  429 ggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaat-atttttaaaatcttaacattttatctttgt 527  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| |||| ||  || ||||||||||||  ||||||||||  | |||||||||||  ||    
T  13987281 ggattaaatatgtttttagttcttacatttcgcgcccttttgaagaataatctctatatttcattaaatgttttttaaaattctcacattttatctccgt 13987380  T
Q  528 tttcaaaattagtctctgctg 548  Q
    | | |||||||||||||||||    
T  13987381 tattaaaattagtctctgctg 13987401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 18340738 - 18340659
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatctt 511  Q
    ||||||||| ||||| | ||||||| |||||||||||| || |||||||| ||||||||||||||| |||||||||||||    
T  18340738 ttaaatatgattttagtccttacatgttgcgccccttttaagaatagtccttacatttcattaaatgtttttaaaatctt 18340659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 8750448 - 8750339
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||||||||||   ||||||| |||||||| ||||||| ||||||| | ||||||||| | | |||||||||  ||| ||    
T  8750448 ttaaatatgtttttagtccttacattttgcgtttctttgaagaatagtccctacattttattaaatgtgtttaaaatcctcatattttatctccgttatc 8750349  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  8750348 aaaattagtc 8750339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 523
Target Start/End: Original strand, 18339093 - 18339166
Alignment:
Q  450 cttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    ||||||||||||||||||||||| |||||||  || |||||||||||| ||||||||||| | |||||||||||    
T  18339093 cttacattttgcgcccctttgaagaatagtctctatatttcattaaatgtttttaaaatcctcacattttatct 18339166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 541
Target Start/End: Complemental strand, 3406956 - 3406839
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||| || ||||||||||||||| || ||| ||||||||||  |||||| |||||| |  | |||| ||||||||||||||||||  | ||||||||||    
T  3406956 atttttgggttaaatatgtttttagtt-ttatattttgcgcctttttgaagaatagttccaatattttattaaatatttttaaaattctcacattttatc 3406858  T
Q  523 tttgttttcaaaattagtc 541  Q
    | |||| ||||||||||||    
T  3406857 tctgttatcaaaattagtc 3406839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 30415577 - 30415456
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatcttt 525  Q
    ||||| ||||||||| ||||| | |||||||||| ||| |||| ||| |||||||| ||||||||||| ||| ||||||||||| | ||||||| |||      
T  30415577 ttagggttaaatatggttttagtccttacattttacgctccttcgaagaatagtccctacatttcatt-aatgtttttaaaatcctcacattttgtctcc 30415479  T
Q  526 gttttcaaaattagtctctgctg 548  Q
    ||| |||||||||| ||| ||||    
T  30415478 gttatcaaaattaggctcagctg 30415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 22231248 - 22231171
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||| | |||| ||||||||||||||| || |||||||| || |||||||||||| ||||| |||||    
T  22231248 ttaaatatgtttttagtccttatattttgcgcccctttaaagaatagtccctatatttcattaaatgtttttgaaatc 22231171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 538
Target Start/End: Original strand, 3406461 - 3406567
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||| ||||||||| |||| || ||||| | ||  ||| |||||| |||| |||||||||||| ||||||||||| | | ||||||||| |||| ||    
T  3406461 ttaaataggtttttaatccttaaatattgcgtctctacgaagaatagttcatatatttcattaaatgtttttaaaatccttatattttatctctgttatc 3406560  T
Q  532 aaaatta 538  Q
    |||||||    
T  3406561 aaaatta 3406567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 16284276 - 16284385
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||||||||||    |||||| |||||||  || |||| ||||||| ||||||||||| | | |||||||||  ||| ||    
T  16284276 ttaaatatgtttttagtccttacattttgcgtttttttgaagaatagtctttatattttattaaatgtttttaaaatcctcatattttatctccgttatc 16284375  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  16284376 aaaattagtc 16284385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 15978554 - 15978620
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacattt 489  Q
    ||||||||||||||||||||||| || | |||||||||||   ||||||| |||||||| |||||||    
T  15978554 attttaggattaaatatgtttttgatccctacattttgcgtgactttgaagaatagtccttacattt 15978620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 18339239 - 18339305
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacattt 489  Q
    ||||||||||||||||||||||| || |||||||||||||   ||||||| | |||||| |||||||    
T  18339239 attttaggattaaatatgtttttgatccttacattttgcgtgactttgaagagtagtccttacattt 18339305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 509
Target Start/End: Original strand, 119004 - 119089
Alignment:
Q  424 ttttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||| ||||||||||||||  | | |||||||||| | ||||| |  |||||||| ||||||||| ||||| |||||||||||    
T  119004 ttttagggttaaatatgtttttggtccctacattttgccctcctttaataaatagtccttacatttcaataaatgtttttaaaatc 119089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 31932882 - 31932817
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaat 497  Q
    ||||||||||||| ||| | ||||||||||||||||||||  |||||||  ||||||| |||||||    
T  31932882 ttaaatatgttttcaatccctacattttgcgcccctttgataaatagtctctacattttattaaat 31932817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 519
Target Start/End: Complemental strand, 120051 - 119959
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    |||| ||||||||||||||  | | |||||||||| |  ||||||  |||||||| ||||||||| ||||| ||||||||||| | |||||||    
T  120051 tagggttaaatatgtttttggtccctacattttgcccttctttgacaaatagtccttacatttcaataaatgtttttaaaatccttacatttt 119959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 508
Target Start/End: Complemental strand, 30351792 - 30351716
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||||||| || || | |||||||| | | ||||| || |||||||| ||||||||| ||||||||||||||||    
T  30351792 ttaaatatgttattgatccctacattttaccctcctttaaagaatagtccctacatttcaataaatatttttaaaat 30351716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 31588206 - 31588254
Alignment:
Q  429 ggattaaatatgtttttaattcttacattttgcgcccctttgaataata 477  Q
    |||||||||||||||||  | |||||||||||||||| |||||||||||    
T  31588206 ggattaaatatgttttttgtccttacattttgcgcccttttgaataata 31588254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 508
Target Start/End: Original strand, 37813377 - 37813453
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    |||||||| |||||| | | |||| ||| ||||  |||||| |||||||||||||||||||||| | ||||||||||    
T  37813377 ttaaatatatttttagtccctacagtttacgccattttgaagaatagtccatacatttcattaagtgtttttaaaat 37813453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 518
Target Start/End: Original strand, 87016 - 87107
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattt 518  Q
    |||| ||||||||||||||| |  ||| ||||||||  | | |||| ||||  || ||||||||||||||| ||||||||||||| ||||||    
T  87016 tagggttaaatatgtttttagtctttatattttgcgttcatctgaagaataacccctacatttcattaaatgtttttaaaatcttcacattt 87107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 509
Target Start/End: Complemental strand, 3406782 - 3406696
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| | ||||||||||||||  |||  ||||||||||   |||| || |||||||| ||||||||| ||||| |||||||||||    
T  3406782 attttaaggttaaatatgtttttcgttccgacattttgcgtgacttttaaaaatagtccttacatttcaataaatgtttttaaaatc 3406696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 119186 - 119263
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||  | |||| ||||||||   |||| || |||||||| ||||||||| ||||| |||||||||||    
T  119186 ttaaatatgtttttggtccttagattttgcgtgactttaaagaatagtccttacatttcaataaatgtttttaaaatc 119263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 718312 - 718235
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||  ||| ||||||||||     ||||||||||||| | ||||||||| ||||| |||||||||||    
T  718312 ttaaatatgtttttggttcctacattttgcataattttgaataatagttcttacatttcaataaatgtttttaaaatc 718235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 521
Target Start/End: Complemental strand, 20892632 - 20892544
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttat 521  Q
    ||||||||||||||||| |||| ||||||||  | |||||| |||||||  ||| ||| ||||||| ||||||||||  | |||||||||    
T  20892632 ttaaatatgtttttaatccttaaattttgcg-tcatttgaagaatagtctctacgtttaattaaatgtttttaaaattatcacattttat 20892544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 35373501 - 35373566
Alignment:
Q  483 tacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctgctg 548  Q
    ||||||||||||||||||||||||||| | | ||||||||   ||| | |||||||||| ||||||    
T  35373501 tacatttcattaaatatttttaaaatcctcatattttatccccgttattaaaattagtcactgctg 35373566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 548
Target Start/End: Complemental strand, 38834823 - 38834751
Alignment:
Q  475 atagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctgctg 548  Q
    ||||||| ||||||||||||||| ||||||||||    |||||| |||| |||| || ||||||||||||||||    
T  38834823 atagtccctacatttcattaaatgtttttaaaattcacacatttgatctctgttatc-aaattagtctctgctg 38834751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 427 - 547
Target Start/End: Original strand, 22814293 - 22814413
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||| |    
T  22814293 tagggttaaatatgtttttaattcttacattttgcgcccctttgaagaatagtccatacatttcattaaatgtttttaaaatcctcacattttatcttcg 22814392  T
Q  527 ttttcaaaattagtctctgct 547  Q
    || |||||||||||| |||||    
T  22814393 ttatcaaaattagtccctgct 22814413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 434 - 548
Target Start/End: Original strand, 50732229 - 50732343
Alignment:
Q  434 aaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaa 533  Q
    |||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||  ||| ||||    
T  50732229 aaatatgttttttatccttacattttgcgctcctttgaaaaatagtccatacatttcattaaatatttttaaaatcctcgcattttatctccgttatcaa 50732328  T
Q  534 aattagtctctgctg 548  Q
    |||||||| ||||||    
T  50732329 aattagtccctgctg 50732343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 434 - 548
Target Start/End: Complemental strand, 50780626 - 50780512
Alignment:
Q  434 aaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaa 533  Q
    |||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||  ||| ||||    
T  50780626 aaatatgttttttatccttacattttgcgctcctttgaaaaatagtccatacatttcattaaatatttttaaaatcctcgcattttatctccgttatcaa 50780527  T
Q  534 aattagtctctgctg 548  Q
    |||||||| ||||||    
T  50780526 aattagtccctgctg 50780512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 43933442 - 43933551
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| | ||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||| ||| ||    
T  43933442 ttaaatatatttttagtccttacattttgtgcccgtttgaagaatagtccctacatttcattaaatatttttaaaatcctcacattttatcttcgttatc 43933541  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  43933542 aaaattagtc 43933551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 423 - 545
Target Start/End: Complemental strand, 9218610 - 9218489
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    |||||||| ||||||||||||||| |  ||||||||||||| |||||||| |||||||| || |||||||||||| ||||||||||| | ||||||||||    
T  9218610 attttagggttaaatatgtttttagtcattacattttgcgctcctttgaagaatagtccctatatttcattaaatgtttttaaaatcatcacattttatc 9218511  T
Q  523 tttgttttcaaaattagtctctg 545  Q
    || ||| || |||||||||||||    
T  9218510 ttcgttatc-aaattagtctctg 9218489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 13637478 - 13637587
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||||||||  |||||||||||||  |||||||||||||||  | ||||||||||||||||||||||||||| | |||||||||| ||| ||    
T  13637478 ttaaatatgtttttaatctttacattttgcgcttctttgaataatagtct-tgcatttcattaaatatttttaaaatcttcatattttatcttcgttatc 13637576  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  13637577 aaaattagtct 13637587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 424 - 538
Target Start/End: Complemental strand, 44504482 - 44504368
Alignment:
Q  424 ttttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    ||||||| |||||| |||||||| | |||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  44504482 ttttagggttaaatgtgtttttagtccttacattttgcacccctttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatct 44504383  T
Q  524 ttgttttcaaaatta 538  Q
      ||| |||||||||    
T  44504382 ccgttatcaaaatta 44504368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 13637868 - 13637759
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||| || | ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||| | |||||||||||  ||| ||    
T  13637868 ttaaatatgtttctagtccttacattttgcgcccctttgaagaatagtctctacatttcattaaatatttttaaaatcctcacattttatctccgttatc 13637769  T
Q  532 aaaattagtc 541  Q
    |||| |||||    
T  13637768 aaaactagtc 13637759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 545
Target Start/End: Original strand, 51471337 - 51471450
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||| ||| ||||||||||||||| ||||||||| ||||||   ||||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  51471337 ttaaatatgttcttagttcttacattttgcgtccctttgaagaatagtttctacatttcattaaatgtttttaaaatcctcacattttatctccgttatc 51471436  T
Q  532 aaaattagtctctg 545  Q
    ||||||||||||||    
T  51471437 aaaattagtctctg 51471450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 438 - 541
Target Start/End: Original strand, 44504100 - 44504203
Alignment:
Q  438 atgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaatt 537  Q
    |||| |||| ||||||||||||| | || |||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||  ||| ||||||||    
T  44504100 atgtctttagttcttacattttgtgtccatttgaagaatagtccctacatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaatt 44504199  T
Q  538 agtc 541  Q
    ||||    
T  44504200 agtc 44504203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 432 - 502
Target Start/End: Complemental strand, 45728405 - 45728335
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttt 502  Q
    ||||||||||||||| | ||||||||||| | ||||||||| |||||||||||||||||||||||||||||    
T  45728405 ttaaatatgtttttagtccttacattttgtgtccctttgaagaatagtccatacatttcattaaatatttt 45728335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 538
Target Start/End: Original strand, 25770316 - 25770429
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctt 524  Q
    |||||| || |||||||||||| | |||||||||||   ||||||||| |||||||| ||||||||||||||| |||||| |||| | |||||||||| |    
T  25770316 tttagggttcaatatgtttttagtccttacattttgtatccctttgaagaatagtccctacatttcattaaatgtttttagaatcctcacattttatcat 25770415  T
Q  525 tgttttcaaaatta 538  Q
     ||| |||||||||    
T  25770416 cgttatcaaaatta 25770429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 423 - 520
Target Start/End: Original strand, 48867643 - 48867740
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttta 520  Q
    |||||||| ||||||||||| ||| | | ||||||||||||  |||| ||||||||||| ||||||||| ||||||||||||||||| | ||||||||    
T  48867643 attttagggttaaatatgttattagtccctacattttgcgctactttaaataatagtccctacatttcaataaatatttttaaaatccttacatttta 48867740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 548
Target Start/End: Original strand, 38485692 - 38485814
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctt 524  Q
    ||||| |||||||||| ||||| | ||||||||||| ||| ||||||| |||||||||||||||| |||| || ||||||||||| |  |||||| |||     
T  38485692 tttagtattaaatatgattttagtccttacattttgtgcctctttgaagaatagtccatacattttattatatgtttttaaaatccttgcatttt-tctc 38485790  T
Q  525 tgttttcaaaattagtctctgctg 548  Q
     ||| ||||||||||||| |||||    
T  38485791 cgttatcaaaattagtctttgctg 38485814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 542
Target Start/End: Complemental strand, 25770804 - 25770694
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||||| |||||||||||| | | |||||| |||||| | ||||||| ||||||| |||||||||| || | |||||||||  ||| |     
T  25770804 ttaaatatgtttttaatccttacattttgcactcatttgaagaatagttcctacattttattaaatgtttttaaaatatttatattttatctccgttata 25770705  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  25770704 aaaattagtct 25770694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 546
Target Start/End: Complemental strand, 34743558 - 34743444
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||| | || | |||||| |||||| ||||||||| |||  ||| ||||||||||||||| |||| |||||| | ||||||||| | |||| ||    
T  34743558 ttaaatatgtatctagtccttacactttgcgtccctttgaagaattatccttacatttcattaaatgttttaaaaatcctcacattttatatatgttatc 34743459  T
Q  532 aaaattagtctctgc 546  Q
    |||||||||||||||    
T  34743458 aaaattagtctctgc 34743444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 132147 - 132070
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||||||| |||| | |||||||||||| | |||||||| |||||||| ||||||||||||||| |||||||||||    
T  132147 ttaaatatgtatttagtccttacattttgcactcctttgaagaatagtccttacatttcattaaatgtttttaaaatc 132070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 541
Target Start/End: Complemental strand, 26741393 - 26741283
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    |||| ||||||||||||| | | ||||| ||||||||||||||||| |||||||  |||||||||||     ||||||||||| | ||||||||||| ||    
T  26741393 tagggttaaatatgttttaagtccttacgttttgcgcccctttgaagaatagtctttacatttcattg----tttttaaaatcctcacattttatctctg 26741298  T
Q  527 ttttcaaaattagtc 541  Q
    || ||||||||||||    
T  26741297 ttatcaaaattagtc 26741283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 424 - 541
Target Start/End: Original strand, 37172075 - 37172192
Alignment:
Q  424 ttttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||| ||||||| |||||| | ||||||||||||||   ||| || |||||||  ||||||||||||||| ||||||||||| | ||| |||||||    
T  37172075 ttttaggaataaatatttttttagtccttacattttgcgcttatttaaagaatagtctctacatttcattaaatgtttttaaaatcctcacagtttatct 37172174  T
Q  524 ttgttttcaaaattagtc 541  Q
      ||| ||||||||||||    
T  37172175 ccgttatcaaaattagtc 37172192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 540
Target Start/End: Complemental strand, 43933815 - 43933708
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | || |||||||||| || |||||| |||||||  ||| ||||||||||| ||||||||||| | | ||||||||| |||| ||    
T  43933815 ttaaatatgtttttagtcctcacattttgcgtccatttgaaaaatagtctctac-tttcattaaatgtttttaaaatcctcatattttatctctgttatc 43933717  T
Q  532 aaaattagt 540  Q
    |||||||||    
T  43933716 aaaattagt 43933708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 425 - 504
Target Start/End: Complemental strand, 22814676 - 22814597
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatattttta 504  Q
    |||||| ||||||||||||||| | |||| |||||| ||| ||||||| |||||| ||||||||||||||||| ||||||    
T  22814676 tttagggttaaatatgtttttagtacttatattttgtgcctctttgaaaaatagttcatacatttcattaaatgttttta 22814597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 455 - 541
Target Start/End: Original strand, 9217845 - 9217931
Alignment:
Q  455 attttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtc 541  Q
    |||||||||  ||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||  ||| | ||||||||||    
T  9217845 attttgcgctgctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttattaaaattagtc 9217931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 48868675 - 48868598
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||| ||| | | ||||||||||||  |||||||||||||||| ||||||||| ||||| |||||||||||    
T  48868675 ttaaatatgttattagtccctacattttgcgctactttgaataatagtccctacatttcaataaatgtttttaaaatc 48868598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 510
Target Start/End: Original strand, 44504258 - 44504345
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatct 510  Q
    |||||| | |||||||||||||| ||||||||||||||||   ||||||| | |||||| | ||||||| ||||| ||||||||||||    
T  44504258 attttaaggttaaatatgtttttgattcttacattttgcgtgactttgaaaattagtccttgcatttcaataaatgtttttaaaatct 44504345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 25770496 - 25770573
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||||| |||||||||||||    |||||| |||||||  ||||||||| ||||| |||||||||||    
T  25770496 ttaaatatgtttttaatccttacattttgcgtgattttgaaaaatagtctttacatttcaataaatgtttttaaaatc 25770573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 37172564 - 37172455
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||||| ||| | |||| || ||||||||| |||| | | |||| || ||||||| ||||||||||||  ||||||||||| | || ||    
T  37172564 ttaaatatatttttaatccttgcgttttacgtccctttgaagaataattcctacactttattaaatgtttttaaaatctccacattttatctctattatc 37172465  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  37172464 aaaattagtc 37172455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 523
Target Start/End: Complemental strand, 51755968 - 51755911
Alignment:
Q  466 ctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  51755968 ctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatct 51755911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 7248577 - 7248500
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||||| | |||||||| |  |||||| || ||||||||  |||||| | |||||||||||||||||    
T  7248577 ttaaatatgtttttaatccctacattttacctccctttaaaaaatagtcctcacattttaataaatatttttaaaatc 7248500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 546
Target Start/End: Original strand, 33225490 - 33225604
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| |   |||||||| ||| |||||||  |||||||| ||||||| | ||||| |||||||||||   ||||||||| | ||||  |    
T  33225490 ttaaatatgtttttagtctctacattttacgctcctttgataaatagtccctacatttaagtaaatgtttttaaaatccccacattttatatctgttacc 33225589  T
Q  532 aaaattagtctctgc 546  Q
    ||| |||||| ||||    
T  33225590 aaatttagtccctgc 33225604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 510
Target Start/End: Complemental strand, 33227010 - 33226932
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatct 510  Q
    ||||||||||| ||| | | |||||||||||| |||||||  |||||||| || |||| | ||||| ||||||||||||    
T  33227010 ttaaatatgttcttagtccctacattttgcgctcctttgataaatagtccctatatttaagtaaatgtttttaaaatct 33226932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 508
Target Start/End: Original strand, 54588493 - 54588535
Alignment:
Q  466 ctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||    
T  54588493 ctttgaagaatagtccatacatttcaataaatgtttttaaaat 54588535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 520
Target Start/End: Complemental strand, 51508007 - 51507919
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttta 520  Q
    ||||||||||||||| | |||||||||| ||| | |||||  |||||| | ||||||| | ||||| |||||||| || | ||||||||    
T  51508007 ttaaatatgtttttagtccttacattttacgctcttttgataaatagttcctacatttaagtaaatgtttttaaagtccttacatttta 51507919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 423 - 545
Target Start/End: Original strand, 21182300 - 21182422
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||| || ||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| || ||||||||||    
T  21182300 atttttgggttaaatatgtttttagtccttacattttgcgcccctttgaagaatagtccttacatttcattaaatgtttttaaaattttcacattttatc 21182399  T
Q  523 tttgttttcaaaattagtctctg 545  Q
    | |||| ||||||||||||||||    
T  21182400 tctgttatcaaaattagtctctg 21182422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 2191219 - 2191328
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  2191219 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatc 2191318  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  2191319 aaaattagtc 2191328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 3691477 - 3691368
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||  |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||  ||| ||    
T  3691477 ttaaatatgtttttagtccttgtattttgcgcccctttgaagaatagtccctacatttcattaaatgtttttaaaatcttcacattttatctccgttatc 3691378  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  3691377 aaaattagtc 3691368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 542
Target Start/End: Original strand, 2517406 - 2517525
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    |||||||| |||||||| |||||| | ||||||||||||| | ||||||| |||||||| ||||||||||||||| ||||||||||| | ||||||||||    
T  2517406 attttagggttaaatatatttttagtccttacattttgcgtctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatc 2517505  T
Q  523 tttgttttcaaaattagtct 542  Q
    |  ||| |||||||||||||    
T  2517506 tccgttatcaaaattagtct 2517525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 427 - 522
Target Start/End: Complemental strand, 21217414 - 21217319
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    |||| ||||||||||||||| | ||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| | ||||||||||    
T  21217414 tagggttaaatatgtttttagtccttacattttgcgccgctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatc 21217319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 432 - 522
Target Start/End: Original strand, 21264993 - 21265083
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||||||||||||| | ||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| | ||||||||||    
T  21264993 ttaaatatgtttttagtccttacattttgcgccgctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatc 21265083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 24093158 - 24093267
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | |||| || |||| ||| ||    
T  24093158 ttaaatatgtttttagtccttacactttgcgcccctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacatcttctcttcgttatc 24093257  T
Q  532 aaaattagtc 541  Q
    ||||| ||||    
T  24093258 aaaatcagtc 24093267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 432 - 523
Target Start/End: Original strand, 21216925 - 21217016
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||| |||||| | ||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  21216925 ttaaatatctttttagtccttacattttgcgcctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatct 21217016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 432 - 523
Target Start/End: Complemental strand, 21265477 - 21265386
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||| |||||| | ||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  21265477 ttaaatatctttttagtccttacattttgcgcctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatct 21265386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 433 - 523
Target Start/End: Original strand, 7083525 - 7083615
Alignment:
Q  433 taaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||||||||||| |||||||||| || || |||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  7083525 taaatatgtttttaatccttacattttacgtccatttgaagaatagtccctacatttcattaaatttttttaaaatcctcacattttatct 7083615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 32114559 - 32114450
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| | ||||||||||||||| |||  || |||||||| ||||||||||||||||||||||||||  | ||| ||||||| |||| ||    
T  32114559 ttaaatatatttttagtccttacattttgcgcctcttcaaagaatagtccttacatttcattaaatatttttaaaattctcacactttatctctgttatc 32114460  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  32114459 aaaattagtc 32114450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 548
Target Start/End: Complemental strand, 10706719 - 10706623
Alignment:
Q  450 cttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctgctg 548  Q
    ||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||||| | |||||||||||  ||| |||||| ||||| ||||||    
T  10706719 cttacattttgcgcccctttgaagaatagtctata--tttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtccctgctg 10706623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 541
Target Start/End: Complemental strand, 24093649 - 24093535
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    ||||||||||||| |||||||  |||||||||||| ||| |||||| |||||| | || |||| ||||||| ||||||||||| | |||||||||||  |    
T  24093649 taggattaaatatctttttaacccttacattttgcacccatttgaagaatagtgcctatattttattaaatgtttttaaaatccttacattttatctccg 24093550  T
Q  527 ttttcaaaattagtc 541  Q
    || ||||||||||||    
T  24093549 ttatcaaaattagtc 24093535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 21267456 - 21267347
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||||||| ||  |||||||| |||||||| ||||||||||||||| |||| |||||| | ||||||||| ||  || ||    
T  21267456 ttaaatatgtttttagtccttacatttttcgatcctttgaagaatagtccctacatttcattaaatgttttaaaaatcctcacattttatattcattatc 21267357  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  21267356 aaaattagtc 21267347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 546
Target Start/End: Original strand, 3691094 - 3691199
Alignment:
Q  441 tttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagt 540  Q
    |||||| | |||| ||||||||||| |||||| |||||| | ||||||||||||||| ||||||||||| | ||||||||||   ||| |||||||||||    
T  3691094 tttttagtccttatattttgcgcccttttgaagaatagttcctacatttcattaaatgtttttaaaatcctcacattttatcaccgttatcaaaattagt 3691193  T
Q  541 ctctgc 546  Q
    | ||||    
T  3691194 ccctgc 3691199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 32114168 - 32114276
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||||||| ||||| |||||| |||||||| |||| |  ||||||| ||||||||||| | ||||||||||| || | ||    
T  32114168 ttaaatatgtttttagtccttacattttacgccc-tttgaagaatagtccctacaatctattaaatgtttttaaaatcctcacattttatctctgatatc 32114266  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  32114267 aaaattagtc 32114276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 432 - 523
Target Start/End: Original strand, 32860816 - 32860907
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||||||||||    ||| |||||||| ||||||||| |||||||  || |||||||||||| ||||||||||| |||||||||||||    
T  32860816 ttaaatatgtttttagcctttatattttgcgtccctttgaaaaatagtcgttatatttcattaaatgtttttaaaatcctaacattttatct 32860907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 519
Target Start/End: Complemental strand, 23222956 - 23222864
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    |||| ||||||||||||||| | | ||||||||||||  |||| ||||||||||| ||||||||| || || ||||||||||| | |||||||    
T  23222956 tagggttaaatatgtttttagtccctacattttgcgcaactttaaataatagtccttacatttcaatatatgtttttaaaatcctcacatttt 23222864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 542
Target Start/End: Complemental strand, 39729700 - 39729584
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatcttt 525  Q
    ||||| |||| || ||||||| | |||| |||||||| |  |||||| |||||||  || |||||||||||||||||||||||| | |||||||||||      
T  39729700 ttagggttaattacgtttttagtccttatattttgcgtcagtttgaagaatagtctttatatttcattaaatatttttaaaatcctcacattttatctcc 39729601  T
Q  526 gttttcaaaattagtct 542  Q
    ||| || ||||||||||    
T  39729600 gttatcgaaattagtct 39729584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 423 - 497
Target Start/End: Original strand, 39600765 - 39600839
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaat 497  Q
    |||||||| ||||||||||||||||| ||||||||||||| | |||  || |||||||  |||||||||||||||    
T  39600765 attttagggttaaatatgtttttaatccttacattttgcgtctcttgaaagaatagtctttacatttcattaaat 39600839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 24093322 - 24093408
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| | |||||||||||||| || | ||||||||| |   ||||||| |||||||| | ||||||| ||||| |||||||||||    
T  24093322 attttaaggttaaatatgtttttgatccctacattttgagtgactttgaaaaatagtccttgcatttcaataaatgtttttaaaatc 24093408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 509
Target Start/End: Complemental strand, 2036699 - 2036614
Alignment:
Q  424 ttttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||| ||||||||||| ||||| | |||||||| | ||  ||| || |||||||| ||||||||| | ||| |||||||||||    
T  2036699 ttttagggttaaatatgttattaatccctacattttacacctttttaaagaatagtccctacatttcaattaatgtttttaaaatc 2036614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 3625001 - 3624893
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||||   |||||||||||||     ||||||| |||||||| ||||||||| ||||| |||||||||| |  |||||||| |||  ||| |    
T  3625001 ttaaatatgttttcggttcttacattttgacggactttgaagaatagtccctacatttcaataaatgtttttaaaat-tctacattttaccttcttttac 3624903  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  3624902 aaaattagtc 3624893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 39947174 - 39947097
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||  | | ||||||||| |   ||||||| |||||||| ||||||||| ||||| |||||||||||    
T  39947174 ttaaatatgtttttggtccctacattttgagtgactttgaacaatagtccttacatttcaataaatgtttttaaaatc 39947097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 508
Target Start/End: Original strand, 10708025 - 10708101
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||||||||||  | | |||||||||| | | |||||  |||||||| ||||||||| ||||| ||||||||||    
T  10708025 ttaaatatgtttttggtccctacattttgccctcttttgacaaatagtccttacatttcaataaatgtttttaaaat 10708101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 44930026 - 44930062
Alignment:
Q  473 taatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  44930026 taatagtccttacatttcaataaatatttttaaaatc 44930062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 426 - 548
Target Start/End: Complemental strand, 26997963 - 26997841
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatcttt 525  Q
    ||||| ||||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||      
T  26997963 ttagggttaaatatgtttttagttcttacattttgcgtccatttgaagaatagtccatacatttcattaattatttttaaaatcctcacattttatctcc 26997864  T
Q  526 gttttcaaaattagtctctgctg 548  Q
    ||| |||||||||||| ||||||    
T  26997863 gttatcaaaattagtccctgctg 26997841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 423 - 539
Target Start/End: Original strand, 13315195 - 13315311
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||| || ||||||||||||||| | |||||||||||||||| ||| || |||||||| ||||||||||||||| ||||||||||| | ||||||||||    
T  13315195 atttttgggttaaatatgtttttagtccttacattttgcgcccatttaaagaatagtccctacatttcattaaatgtttttaaaatcatcacattttatc 13315294  T
Q  523 tttgttttcaaaattag 539  Q
    | |||| ||||||||||    
T  13315295 tctgttatcaaaattag 13315311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 6297464 - 6297573
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||| |||| | ||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||||||| | ||||||| ||| |||| ||    
T  6297464 ttaaatatgtctttagtccttacattttgcgcccctttgaagaatagttcctacatttcattaaatgtttttaaaatcctcacattttctctctgttatc 6297563  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  6297564 aaaattagtc 6297573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 432 - 540
Target Start/End: Complemental strand, 9800431 - 9800323
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||  | ||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | |||||||||||| ||| ||    
T  9800431 ttaaatatatttttggtccttgcattttgcgcccctttgaagaatagtccatatatttcattaaatgtttttaaaatccttacattttatcttcgttatc 9800332  T
Q  532 aaaattagt 540  Q
    |||||||||    
T  9800331 aaaattagt 9800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 427 - 541
Target Start/End: Original strand, 10047476 - 10047589
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||| |||||||| |||| |||||||||| ||||||||||  | |||||||||||  |    
T  10047476 tagggttaaatatgtttttaatccttacattttgcgcccttttgaagaatagtccctaca-ttcattaaatgtttttaaaattctcacattttatctccg 10047574  T
Q  527 ttttcaaaattagtc 541  Q
    || ||||||||||||    
T  10047575 ttatcaaaattagtc 10047589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 467 - 548
Target Start/End: Original strand, 12489265 - 12489346
Alignment:
Q  467 tttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctgctg 548  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||    
T  12489265 tttgaagaatagtccctacatttcattaaatatttttaaaatcctcgcattttatctttgttatcaaaattagtctctgctg 12489346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 16662170 - 16662279
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||| |||| ||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||||  | ||||||||||| |||| |     
T  16662170 ttaattatgattttagttcttacattttgcgctcctttgaagaatagtccctacatttcattaaatgtttttaaaattctcacattttatctctgttatt 16662269  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  16662270 aaaattagtc 16662279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 428 - 548
Target Start/End: Original strand, 26720319 - 26720439
Alignment:
Q  428 aggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgt 527  Q
    |||||||||||| |||||| | | |||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||   ||||||| ||| |||    
T  26720319 aggattaaatatatttttagtccctacattttgcgctcctttgaagaatagtccctacatttcattaaatatttttaaaatccctacattttttctctgt 26720418  T
Q  528 tttcaaaattagtctctgctg 548  Q
    |  || ||||| |||||||||    
T  26720419 taacacaattaatctctgctg 26720439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 426 - 541
Target Start/End: Original strand, 17914193 - 17914308
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatcttt 525  Q
    ||||| ||||||||||||| | |  |||||||||||| | ||||||| |||||||| ||||||| ||||||| ||||||||||| | ||||||||||| |    
T  17914193 ttagggttaaatatgttttaagtctttacattttgcgtctctttgaagaatagtccctacattttattaaatgtttttaaaatcctcacattttatctct 17914292  T
Q  526 gttttcaaaattagtc 541  Q
    ||| ||||||||||||    
T  17914293 gttatcaaaattagtc 17914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 541
Target Start/End: Complemental strand, 6298128 - 6298014
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    |||| |||||| |||||||| | ||||||||||||  ||||||||| |||||||| ||||||||||||||| ||||||||||| | ||||||||| |  |    
T  6298128 tagggttaaatgtgtttttagtgcttacattttgcttccctttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatttccg 6298029  T
Q  527 ttttcaaaattagtc 541  Q
    || ||||||||||||    
T  6298028 ttatcaaaattagtc 6298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 432 - 548
Target Start/End: Original strand, 9800041 - 9800157
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||| |||||||||| ||||||| |||| ||| ||||||| ||||||| ||||||||||| | |||||| ||||  ||| ||    
T  9800041 ttaaatatgtttttagtccttagattttgcgcctctttgaagaataatccttacattttattaaatgtttttaaaatcctcacatttcatctccgttatc 9800140  T
Q  532 aaaattagtctctgctg 548  Q
    ||||||||||| |||||    
T  9800141 aaaattagtctttgctg 9800157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 17915594 - 17915479
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||| || |||||||| |||| ||| ||||||| ||||||| ||||| ||||| | ||||||||||| |||| ||    
T  17915594 ttaaatatgtttttagtccttacattttgtgctcctttgaagaata-tccttacattttattaaatgttttttaaatcctcacattttatctctgttatc 17915496  T
Q  532 aaaattagtctctgctg 548  Q
    ||||||||||| |||||    
T  17915495 aaaattagtctttgctg 17915479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 537
Target Start/End: Complemental strand, 21006210 - 21006105
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||| || | ||||||||||  ||||||||||| |||||||| ||||||| ||||||| ||||||||||| | |||||||||||  ||| ||    
T  21006210 ttaaatatgtttatactccttacatttttggcccctttgaaaaatagtccctacattttattaaatgtttttaaaatcctcacattttatctccgttatc 21006111  T
Q  532 aaaatt 537  Q
    ||||||    
T  21006110 aaaatt 21006105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 541
Target Start/End: Complemental strand, 6297959 - 6297841
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||||||  ||| |||||||||  | | |||||||||||   ||||||| |||||||| ||||||||||||||| ||||||||||| | ||||||||||    
T  6297959 attttagggataattatgtttttcgtccctacattttgcgtgactttgaagaatagtccttacatttcattaaatgtttttaaaatcctcacattttatc 6297860  T
Q  523 tttgttttcaaaattagtc 541  Q
    |  ||| ||||||||||||    
T  6297859 tccgttatcaaaattagtc 6297841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 542
Target Start/End: Complemental strand, 10047966 - 10047856
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||||| |||||||||| | | |||||||| |||||||  || || |||||||||||||||||||| || | |||||||||  ||| ||    
T  10047966 ttaaatatatttttaatccttacattttccactcctttgaagaatagtctttatatatcattaaatatttttaaaattttcatattttatctccgttatc 10047867  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  10047866 aaaattagtct 10047856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 523
Target Start/End: Complemental strand, 26243482 - 26243392
Alignment:
Q  433 taaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||||||||| | |||| ||||||||| |||||||| |||||||  || |||||||||||| ||||||||||| | |||||||||||    
T  26243482 taaatatgtttttagtccttatattttgcgctcctttgaagaatagtctctatatttcattaaatgtttttaaaatcctcacattttatct 26243392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 433 - 508
Target Start/End: Complemental strand, 16662558 - 16662483
Alignment:
Q  433 taaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    |||||||||||||| | |||||||||||||| | |||||| |||||| | ||||||||||||||| ||||||||||    
T  16662558 taaatatgtttttagtccttacattttgcgctcttttgaagaatagttcctacatttcattaaatgtttttaaaat 16662483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 538
Target Start/End: Complemental strand, 7344940 - 7344838
Alignment:
Q  436 atatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaa 535  Q
    ||||||||||| | ||||||||||| ||||||||||| |||| ||||||||||| |||| || ||||||||||| | | ||||||| |  ||| ||||||    
T  7344940 atatgtttttagtccttacattttgtgcccctttgaagaataatccatacattttattatatgtttttaaaatcctcatattttatgtccgttatcaaaa 7344841  T
Q  536 tta 538  Q
    |||    
T  7344840 tta 7344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 546
Target Start/End: Original strand, 40304686 - 40304800
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| | | |||||||||| | |||||||  |||||||||||||||| | ||||||||||||||||| | ||||||||| | ||||  |    
T  40304686 ttaaatatatttttagtccctacattttgcactcctttgataaatagtccatacatttaagtaaatatttttaaaatcctcacattttatatctgttacc 40304785  T
Q  532 aaaattagtctctgc 546  Q
    ||| |||||| ||||    
T  40304786 aaatttagtccctgc 40304800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 44024391 - 44024477
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| | ||||||||||||||  | |||||||||||||   ||||||| |||||||| ||||||||| |||||||||||||||||    
T  44024391 attttaaggttaaatatgtttttggtccttacattttgcgtgactttgaaaaatagtccttacatttcaataaatatttttaaaatc 44024477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 528
Target Start/End: Complemental strand, 12489614 - 12489519
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgtt 528  Q
    ||||||||||||||| | ||||||||||||| |  | |||| |||||||| ||||||||||| ||| ||||||||||| | ||||||||||| ||||    
T  12489614 ttaaatatgtttttagtccttacattttgcgtcgttatgaagaatagtccttacatttcatt-aatgtttttaaaatccttacattttatctctgtt 12489519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 541
Target Start/End: Original strand, 44024230 - 44024336
Alignment:
Q  435 aatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaa 534  Q
    ||||| |||||| | |||| ||||||| | | |||||| ||||||||||||||||||  |||| ||||||||||| | ||||||||||   ||| |||||    
T  44024230 aatatatttttagtccttaaattttgcactcatttgaagaatagtccatacatttcaccaaatgtttttaaaatcatcacattttatccccgttatcaaa 44024329  T
Q  535 attagtc 541  Q
    |||||||    
T  44024330 attagtc 44024336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 34614015 - 34614099
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatctta 512  Q
    |||| ||||||||||| || ||  |||||||||||||  ||||||| ||||||| |||||||||| ||||| ||||||||||||||    
T  34614015 tagggttaaatatgttattgatctttacattttgcgcgactttgaagaatagtc-atacatttcaataaatgtttttaaaatctta 34614099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 509
Target Start/End: Complemental strand, 11089388 - 11089305
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||| |||| |||||||||| |||||| ||||| ||| ||||| || |||| ||  |||||||| ||||||||||||||||||    
T  11089388 ttagggttaagtatgtttttagttcttagatttttcgctcctttaaagaataatcattacatttcgttaaatatttttaaaatc 11089305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 509
Target Start/End: Complemental strand, 21006046 - 21005960
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| | ||||||||||||||  | | |||||||||||   ||||||| |||||||| ||||||||| ||||| |||||||||||    
T  21006046 attttaaggttaaatatgtttttggtccctacattttgcgtggctttgaaaaatagtccttacatttcaataaatgtttttaaaatc 21005960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 521
Target Start/End: Original strand, 44802177 - 44802272
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttat 521  Q
    |||||| ||||||||||||||| | |  ||||||||||| | |||||  |||||||||||||||| | | ||| ||||||||||| | |||||||||    
T  44802177 tttagggttaaatatgtttttagtcccaacattttgcgctcatttgataaatagtccatacatttaagt-aatgtttttaaaatcctcacattttat 44802272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 36155293 - 36155360
Alignment:
Q  452 tacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    ||||||||| ||  |||||||||||||||| ||||||| | ||||| ||||||||||| | |||||||    
T  36155293 tacattttgtgcgactttgaataatagtccctacattttaataaatgtttttaaaatccttacatttt 36155360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 519
Target Start/End: Original strand, 44148579 - 44148666
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    ||||||||||||||| | | |||||||| ||| | |||||| |||||||| ||||||| | ||||  ||||||||||| | |||||||    
T  44148579 ttaaatatgtttttagtccctacattttacgctcttttgaagaatagtccctacattttaataaacgtttttaaaatcctcacatttt 44148666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 521
Target Start/End: Complemental strand, 44803660 - 44803562
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttat 521  Q
    |||| ||| |||||||||| |||| | | |||||||||||| |||||||  |||||||| ||||||| | ||||  ||||||||||  | |||||||||    
T  44803660 atttaagggttaaatatgtgtttagtccctacattttgcgctcctttgataaatagtccctacatttaagtaaaagtttttaaaattctcacattttat 44803562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 509
Target Start/End: Complemental strand, 4694527 - 4694443
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| ||||||||||||||| | | || ||||| ||| | |||||  |||||||| ||||||| | ||||| |||||||||||    
T  4694527 tttagggttaaatatgtttttagtccctatattttacgctcttttgataaatagtccctacatttaagtaaatgtttttaaaatc 4694443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 432 - 548
Target Start/End: Original strand, 20543913 - 20544029
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||| | | |||||||||  ||| ||    
T  20543913 ttaaatatgtttttaattcttacattttgtgcccctttgaagaatagtccctacatttcattaaatttttttaaaatcctcatattttatctccgttatc 20544012  T
Q  532 aaaattagtctctgctg 548  Q
    ||||||||| |||||||    
T  20544013 aaaattagtttctgctg 20544029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 11974666 - 11974776
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||| ||||| | |||||||||||||| |||||||| |||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||| ||    
T  11974666 ttaaatatgattttagtccttacattttgcgctcctttgaaaaatagtctgtacatttcattaaatgtttttaaaatcctcacattttatcttcgttatc 11974765  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  11974766 aaaattagtct 11974776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 32092230 - 32092340
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||||||| ||||||| |||||||| | ||||||||||||| ||||||||||| | ||||||| | |||||| ||    
T  32092230 ttaaatatgtttttagtccttacattttgcgcctctttgaagaatagtccctgcatttcattaaatgtttttaaaatcctcacattttgtgtttgttatc 32092329  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  32092330 aaaattagtct 32092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 438 - 544
Target Start/End: Complemental strand, 22948960 - 22948854
Alignment:
Q  438 atgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaatt 537  Q
    ||||||||| | ||||||||||||| ||||||||| |||||||  ||||||||||||||| ||||||||||| | |||||||||||  ||| ||||||||    
T  22948960 atgtttttagtccttacattttgcgaccctttgaagaatagtctctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatt 22948861  T
Q  538 agtctct 544  Q
    |||||||    
T  22948860 agtctct 22948854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 427 - 539
Target Start/End: Original strand, 18152753 - 18152865
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||  |||||| || |||||||| | |||||||||||  |    
T  18152753 tagggttaaatatgttttcagttcttacattttgcgcccctttgaagaatagtccctacattttgttaaatgttcttaaaatcctcacattttatctccg 18152852  T
Q  527 ttttcaaaattag 539  Q
    || ||||||||||    
T  18152853 ttatcaaaattag 18152865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 432 - 523
Target Start/End: Complemental strand, 17075705 - 17075614
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||| |||||| | ||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  17075705 ttaaatatctttttagtccttacattttgcgcctctttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatct 17075614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 428 - 541
Target Start/End: Complemental strand, 20544402 - 20544290
Alignment:
Q  428 aggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgt 527  Q
    ||||||||||||||||||| | |||| ||||||| ||  |||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||| ||    
T  20544402 aggattaaatatgtttttagtccttatattttgcacctttttgaagaatagtccttacatttcattaaatgtttttaaaatc-tcacattttatcttcgt 20544304  T
Q  528 tttcaaaattagtc 541  Q
    | ||||||| ||||    
T  20544303 tatcaaaatcagtc 20544290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 432 - 545
Target Start/End: Original strand, 28852695 - 28852808
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||||| ||||||||||| | || ||| ||||||| ||| ||||||||||||||| ||||||||||| | ||||||||||   ||| ||    
T  28852695 ttaaatatgtttttaatccttacattttgtgtccatttaaataatactccctacatttcattaaatgtttttaaaatcctcacattttatccccgttatc 28852794  T
Q  532 aaaattagtctctg 545  Q
    |||||||| |||||    
T  28852795 aaaattagcctctg 28852808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 435 - 523
Target Start/End: Complemental strand, 6621200 - 6621113
Alignment:
Q  435 aatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||||||  |||||||||| | |||||||||||    
T  6621200 aatatgtttttaattcttacattttgtgaccctttgaagaatagtccctacatttcattaaat-gttttaaaatcctcacattttatct 6621113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 426 - 522
Target Start/End: Original strand, 17075215 - 17075311
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||| ||||||||||||||| | |||| |||||||||| ||||||| |||||||| ||||||||||||||  ||||||||||| | ||||||||||    
T  17075215 ttagggttaaatatgtttttagtccttatattttgcgccgctttgaagaatagtccctacatttcattaaaagtttttaaaatcctcacattttatc 17075311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 44803720 - 44803611
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||||||  |||| || |||||||  ||||||||||||||| ||||||||||  | |||||||||||  ||| ||    
T  44803720 ttaaatatgtttttagtccttacattttgcgcttctttaaagaatagtctctacatttcattaaatgtttttaaaattctcacattttatctccgttatc 44803621  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  44803620 aaaattagtc 44803611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 544
Target Start/End: Complemental strand, 32092617 - 32092505
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| ||||||||||||| ||  ||| |||   | |||| ||||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  32092617 ttaaatatgtttttagttcttacattttgtgcttcttcgaagtttcgtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatc 32092518  T
Q  532 aaaattagtctct 544  Q
    |||||||||||||    
T  32092517 aaaattagtctct 32092505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 509
Target Start/End: Complemental strand, 16755729 - 16755644
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||||| ||||||||||||||||| || | |||||||||| ||||||| |||||||  || ||||||||||||||||||||||||    
T  16755729 attttagggttaaatatgtttttaatcct-atattttgcgccactttgaagaatagtctctatatttcattaaatatttttaaaatc 16755644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 538
Target Start/End: Original strand, 28854679 - 28854785
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||||| |||| ||||||||||| ||| || |||| ||| ||||||| ||||||| ||||||||||| | ||||||||| |  ||| ||    
T  28854679 ttaaatatgtttttaatccttatattttgcgcccatttaaagaatactccctacattttattaaatgtttttaaaatcctcacattttatttcagttatc 28854778  T
Q  532 aaaatta 538  Q
    |||||||    
T  28854779 aaaatta 28854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 508
Target Start/End: Original strand, 30938595 - 30938673
Alignment:
Q  430 gattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||||||||||||| | ||||||||||||||| |||| || |||| ||||||||||| ||||||| ||||||||||    
T  30938595 gattaaatatgtttttagtccttacattttgcgcctctttaaagaataatccatacattttattaaatgtttttaaaat 30938673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 541
Target Start/End: Complemental strand, 42750187 - 42750097
Alignment:
Q  451 ttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtc 541  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||  ||||||||||| | |||||||||||  ||| | ||||||||||    
T  42750187 ttacattttacgcccctttgaagaatagtccctacatttcattaaacgtttttaaaatcctcacattttatctccgttattaaaattagtc 42750097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 425 - 540
Target Start/End: Complemental strand, 10466874 - 10466759
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctt 524  Q
    |||||| |||||||||||||||||  |||||||||||| |  |||||| |||||||  || |||| ||||||| ||||||||||| | |||||||||||     
T  10466874 tttagggttaaatatgtttttaatctttacattttgcgtctatttgaagaatagtctctatattttattaaatgtttttaaaatcgtcacattttatctc 10466775  T
Q  525 tgttttcaaaattagt 540  Q
      || |||||||||||    
T  10466774 cattatcaaaattagt 10466759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 430 - 545
Target Start/End: Complemental strand, 11975152 - 11975038
Alignment:
Q  430 gattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttt 529  Q
    |||||||||| |||||||| ||||||||| | || |||||||| |||||||  ||| ||| ||||||| ||||||||||| | ||||||||| |  |||     
T  11975152 gattaaatatatttttaatccttacattt-gtgctcctttgaaaaatagtctttacgttttattaaatgtttttaaaatcctcacattttatttccgtta 11975054  T
Q  530 tcaaaattagtctctg 545  Q
    ||||||||||||||||    
T  11975053 tcaaaattagtctctg 11975038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 509
Target Start/End: Complemental strand, 30939661 - 30939575
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||| ||| ||||||||||||||| | | |||||||| ||||  || ||| |||||||| |||||||||||||||||||||||||||    
T  30939661 atttaagggttaaatatgtttttagtccctacattttacgccatttcgaagaatagtccctacatttcattaaatatttttaaaatc 30939575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 23549095 - 23548986
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| |||||||||||||||||| |||||| |||| ||  || |||||||||||| ||||| ||||| | | ||||||| |  ||| ||    
T  23549095 ttaaatatatttttatttcttacattttgcgcccttttgaagaatactctctatatttcattaaatctttttgaaatcctcaaattttatttccgttatc 23548996  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  23548995 aaaattagtc 23548986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 508
Target Start/End: Complemental strand, 27311118 - 27311060
Alignment:
Q  450 cttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||||||||||| |||| || |||||||| ||||||||||||||| ||||||||||    
T  27311118 cttacattttgcgcctctttaaagaatagtccctacatttcattaaatgtttttaaaat 27311060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 5029841 - 5029733
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| |  |||||||||||| | ||||||| |||||||| || |||||||||||| ||||| ||||| | |||||||||||  | | ||    
T  5029841 ttaaatatatttttagtcgttacattttgcgtctctttgaagaatagtccctatatttcattaaatgttttt-aaatcctcacattttatctccgctatc 5029743  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  5029742 aaaattagtc 5029733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 27310049 - 27310126
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||| | | |||||||| ||||| || ||| ||| |||| ||||||||||||||| |||||||||||    
T  27310049 ttaaatatgtttttattccctacattttacgccctttcgaagaatggtccctacatttcattaaatgtttttaaaatc 27310126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 541
Target Start/End: Original strand, 28838348 - 28838463
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    |||||||  ||||||||||||||| |  |||||||||| | || |||||| ||  ||||  |||||||||||||| ||||||||||| | ||||||||||    
T  28838348 attttagtgttaaatatgtttttagtctttacattttgtgtcc-tttgaagaa--gtcccgacatttcattaaatgtttttaaaatcctcacattttatc 28838444  T
Q  523 tttgttttcaaaattagtc 541  Q
    |  ||| ||||||||||||    
T  28838445 tccgttatcaaaattagtc 28838463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 495
Target Start/End: Original strand, 23548056 - 23548119
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaa 495  Q
    ||||||||||||||| | |||| |||||||||  ||||||| |||| ||| |||||||||||||    
T  23548056 ttaaatatgtttttagtccttatattttgcgcttctttgaagaataatccctacatttcattaa 23548119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 545
Target Start/End: Original strand, 44803382 - 44803441
Alignment:
Q  486 atttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctg 545  Q
    |||| ||||||||||||||||||| | | ||||||||| || | ||||||||||||||||    
T  44803382 attttattaaatatttttaaaatccttatattttatctctgctatcaaaattagtctctg 44803441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 509
Target Start/End: Complemental strand, 18443701 - 18443620
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||| ||||||||||||||  | ||||||||||||||   |||||  |||||||| ||||||||| ||||| |||||||||||    
T  18443701 tagggttaaatatgtttttggtccttacattttgcgcgattttgag-aatagtccctacatttcaataaatgtttttaaaatc 18443620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 11992716 - 11992793
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||||||||||||||  ||| |||||||||  |||| || ||| |||| ||||||| ||| ||| |||||||||||    
T  11992716 ttaaatatgtttttaatctttatattttgcgcatctttaaagaattgtccctacattttatttaatgtttttaaaatc 11992793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 546
Target Start/End: Complemental strand, 12933156 - 12933035
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctt 524  Q
    |||||| ||||||||||||||| | | ||||||||| |  |||||||  |||||||| || |||| | ||||| ||| ||||||| | ||||||||| |     
T  12933156 tttagggttaaatatgtttttagtccctacattttgtgttcctttgataaatagtccctatatttaagtaaatgtttctaaaatcctcacattttatatc 12933057  T
Q  525 tgttttcaaaattagtctctgc 546  Q
    ||||  |||| |||||| ||||    
T  12933056 tgttaccaaatttagtccctgc 12933035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 547
Target Start/End: Complemental strand, 49053966 - 49053853
Alignment:
Q  435 aatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatcttt-gttttcaa 533  Q
    |||||||||||  | ||||||||||  | | ||||||| |||| ||| ||||||||||||||  ||||||||||| | || |||||| |||  || ||||    
T  49053966 aatatgtttttcgtccttacattttaagtctctttgaaaaataatccctacatttcattaaaagtttttaaaatcctcacgttttatttttcattatcaa 49053867  T
Q  534 aattagtctctgct 547  Q
    ||||||||| ||||    
T  49053866 aattagtctatgct 49053853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 546
Target Start/End: Original strand, 12908389 - 12908497
Alignment:
Q  438 atgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaatt 537  Q
    ||||||||| | | |||||||| ||| | |||||  |||| ||| ||||||| | ||||| ||||||||||| | |||||||||||  |||| |||| ||    
T  12908389 atgtttttagtccctacattttacgctcatttgataaataatccctacatttaactaaatgtttttaaaatcctcacattttatctccgtttccaaattt 12908488  T
Q  538 agtctctgc 546  Q
    |||| ||||    
T  12908489 agtccctgc 12908497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 432 - 548
Target Start/End: Original strand, 17157548 - 17157664
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| |||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| | || ||    
T  17157548 ttaaatatgtttttagttcttacattttacgcctcattgaagaatagtccatacatttcattaaatatttttaaaatcctcacattttatctctattatc 17157647  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||| ||||||    
T  17157648 aaaattagtcactgctg 17157664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 14713094 - 14712978
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||| ||||  ||||  | | ||||||||| |||| ||    
T  14713094 ttaaatatgtttttaattcttacattttgcgctcttttgaagaatagtccttacatttcattaaatgttttagaaatgctcatattttatctctgttatc 14712995  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||||||||||    
T  14712994 aaaattagtctctgctg 14712978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 432 - 523
Target Start/End: Complemental strand, 211809 - 211717
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatat-ttttaaaatcttaacattttatct 523  Q
    ||||||||||||||||| |||||||||||||||  |||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  211809 ttaaatatgtttttaatccttacattttgcgcctatttgaagaatagtccctacatttcattaaatattttttaaaatcttcacattttatct 211717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 432 - 519
Target Start/End: Original strand, 211443 - 211530
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||||| | |||||||    
T  211443 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatagtccgtacatttcattaaatgattttaaaatcctcacatttt 211530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 7646070 - 7645954
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||| || |||||||| |||||||| ||||||||| ||||| |||| |||||  | |||||||||||  ||| ||    
T  7646070 ttaaatatgtttttagtccttacattttgtgctcctttgaagaatagtccttacatttcaataaatgttttaaaaattctcacattttatctccgttatc 7645971  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||| ||||||    
T  7645970 aaaattagtccctgctg 7645954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 509
Target Start/End: Original strand, 5974008 - 5974090
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||| ||||||||||||||| | |||| ||||||| |||||||||| |||||||| ||||||||||||||| |||||||||||    
T  5974008 tagggttaaatatgtttttagtccttatattttgcacccctttgaagaatagtccctacatttcattaaatgtttttaaaatc 5974090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 509
Target Start/End: Complemental strand, 8710433 - 8710351
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||| ||||||||||||||| | |||| ||||||| |||||||||| |||||||| ||||||||||||||| |||||||||||    
T  8710433 tagggttaaatatgtttttagtccttatattttgcacccctttgaagaatagtccttacatttcattaaatgtttttaaaatc 8710351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 424 - 509
Target Start/End: Original strand, 4510182 - 4510267
Alignment:
Q  424 ttttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||| ||||||||||||||| | |||||||||| ||||  |||||| |||||||| ||||||||||||||| |||||||||||    
T  4510182 ttttagggttaaatatgtttttagtccttacattttacgcctatttgaagaatagtccctacatttcattaaatgtttttaaaatc 4510267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 17157921 - 17157854
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatat 499  Q
    ||||||||||||||| | ||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  17157921 ttaaatatgtttttagtccttacattttgcgccactttgaagaatagtccctacatttcattaaatat 17157854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 548
Target Start/End: Original strand, 21113049 - 21113147
Alignment:
Q  450 cttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctgctg 548  Q
    ||||||||||||||||  ||||| |||||||  ||||||||||||||| ||||||||||  | |||||||||||   || |||||||||||||||||||    
T  21113049 cttacattttgcgccctattgaagaatagtctctacatttcattaaatgtttttaaaattctcacattttatctcctttatcaaaattagtctctgctg 21113147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 14712823 - 14712909
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| | ||||||||||||||  | | ||||||||||| | ||||||| |||||||| ||||||||| ||||| |||||||||||    
T  14712823 attttaaggttaaatatgtttttggtccctacattttgcgtcactttgaaaaatagtccttacatttcaataaatgtttttaaaatc 14712909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 538
Target Start/End: Original strand, 1869453 - 1869559
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||||| | | || |||| || |||| |   ||||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  1869453 ttaaatatgtttttagtccttacattctacaccactttaaaaaataatttctacatttcattaaatgtttttaaaatcctcacattttatctccgttatc 1869552  T
Q  532 aaaatta 538  Q
    |||||||    
T  1869553 aaaatta 1869559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 19595737 - 19595660
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||| ||| | | |||||||||| ||  ||| || |||||||| ||||||||| |||||||||||||||||    
T  19595737 ttaaatatgttattagtccatacattttgcacctttttaaagaatagtccctacatttcaataaatatttttaaaatc 19595660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 546
Target Start/End: Complemental strand, 25932476 - 25932359
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaa---taatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgtt 528  Q
    ||||||||||||||| | |||| ||||||| ||  ||||||   ||||||||  |||||||| || ||| || |||||||  | |||||||||||  |||    
T  25932476 ttaaatatgtttttagtccttatattttgcaccattttgaagattaatagtcactacatttcgttcaatgttattaaaattctcacattttatctccgtt 25932377  T
Q  529 ttcaaaattagtctctgc 546  Q
     |||||||||||||||||    
T  25932376 atcaaaattagtctctgc 25932359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 510
Target Start/End: Original strand, 5975834 - 5975911
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatct 510  Q
    ||||||||||||||| | || ||||||| | || ||||||| |||||||| ||||||| | ||||| ||||||||||||    
T  5975834 ttaaatatgtttttagtcctcacattttccacctctttgaagaatagtcc-tacattttaataaatgtttttaaaatct 5975911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 541
Target Start/End: Complemental strand, 20522209 - 20522135
Alignment:
Q  467 tttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtc 541  Q
    |||||| |||||||| ||||||||| ||||| |||||||||||   |||||||| ||  |||| |||||||||||    
T  20522209 tttgaagaatagtccctacatttcaataaatgtttttaaaatcactacattttacctccgtttacaaaattagtc 20522135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 25932085 - 25932190
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| |  |||||||||||   |||||||| |||||||| | ||||||||    ||||||||||||| |  ||||||||||  ||| ||    
T  25932085 ttaaatatatttttagtctttacattttgctttcctttgaagaatagtccctgcatttcat----tatttttaaaatccttgcattttatctccgttatc 25932180  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  25932181 aaaattagtc 25932190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 425 - 548
Target Start/End: Complemental strand, 108217 - 108094
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctt 524  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||| |||  | | ||||||||||||||| ||||||||||| | |||||||||||     
T  108217 tttaggattaaatatgtttttagtccttacattttgcgcccttttgaagaattattcctacatttcattaaatgtttttaaaatcctcacattttatctc 108118  T
Q  525 tgttttcaaaattagtctctgctg 548  Q
     ||| |||||||||||||||||||    
T  108117 cgttatcaaaattagtctctgctg 108094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 107724 - 107833
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||||||   |||||| ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||| | |||||||||||  ||| ||    
T  107724 ttaaatatgtttttagaccttacactttgcgctcctttgaagaatagtccctacatttcaataaatatttttaaaatcctcacattttatctccgttatc 107823  T
Q  532 aaaattagtc 541  Q
    |||| |||||    
T  107824 aaaaatagtc 107833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 3296545 - 3296654
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  3296545 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatattccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatc 3296644  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  3296645 aaaattagtc 3296654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 51906907 - 51906791
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||||||||||||| |||||||| |||||||| ||||| ||||||||| ||||||||||| | |||||||||||  ||| ||    
T  51906907 ttaaatatgtttttagtccttacattttgcgctcctttgaagaatagtccctacatctcattaaatgtttttaaaatcctcacattttatctccgttatc 51906808  T
Q  532 aaaattagtctctgctg 548  Q
    ||||||||| |||||||    
T  51906807 aaaattagtttctgctg 51906791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 7118252 - 7118143
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  | | |||||||||   || ||    
T  7118252 ttaaatatgtttttagtccttacattttgcgcccctttgaagaatagtccatacatttcattaaatgtttttaaaattctcaaattttatctccattatc 7118153  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  7118152 aaaattagtc 7118143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 48553898 - 48554007
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||| ||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||  ||||||||||| | |||||||||||  ||| ||    
T  48553898 ttaaatacgtttttagtccttacattttgcgtccctttgaagaatagtccatacatttcattaaacctttttaaaatcctcacattttatctccgttatc 48553997  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  48553998 aaaattagtc 48554007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 26168482 - 26168371
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtc--catacatttcattaaatatttttaaaatcttaacattttatctttgttt 529  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||||||  | ||||||| ||||||| ||| ||||||||  ||||||||||||||||     
T  26168482 ttaaatatgtttttaatccttacattttgcgcccctttgtagaatagtcctcctacattttattaaatgtttctaaaatctccacattttatctttgtta 26168383  T
Q  530 tcaaaattagtc 541  Q
    ||||||||||||    
T  26168382 tcaaaattagtc 26168371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 426 - 544
Target Start/End: Original strand, 29691521 - 29691639
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatcttt 525  Q
    ||||| ||||||||||||||| | |||| |||||||  || |||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||      
T  29691521 ttagggttaaatatgtttttagtccttatattttgcatccatttgaagaatagtccctacatttcattaaatgtttttaaaatcctcacattttatctcc 29691620  T
Q  526 gttttcaaaattagtctct 544  Q
    ||| |||||||||||||||    
T  29691621 gttatcaaaattagtctct 29691639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 427 - 541
Target Start/End: Complemental strand, 29692005 - 29691891
Alignment:
Q  427 taggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttg 526  Q
    |||||||||||||||||||| |  || |||||| ||| |||||||||||||||   || |||||||||||||||||||||||| | ||||||||||| ||    
T  29692005 taggattaaatatgtttttagtctttgcattttacgctcctttgaataatagtttttatatttcattaaatatttttaaaatcctcacattttatctctg 29691906  T
Q  527 ttttcaaaattagtc 541  Q
    || ||||||||||||    
T  29691905 ttatcaaaattagtc 29691891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 423 - 541
Target Start/End: Original strand, 51906413 - 51906531
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    |||||||| ||||||||||||||| |  |||||||||||||| ||||||| |||||||| ||| ||||||||||| ||||||| ||| | ||||||||||    
T  51906413 attttagggttaaatatgtttttagtctttacattttgcgcctctttgaagaatagtccctacgtttcattaaatgtttttaatatcctcacattttatc 51906512  T
Q  523 tttgttttcaaaattagtc 541  Q
    |  ||| ||||||||||||    
T  51906513 tccgttatcaaaattagtc 51906531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 3297032 - 3296923
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| | ||||||||||||| ||||||||| |||||||| ||| ||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  3297032 ttaaatatatttttagtccttacattttgcgaccctttgaagaatagtccctacgtttcattaaatgtttttaaaatccttacattttatctccgttatc 3296933  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  3296932 aaaattagtc 3296923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 34129388 - 34129279
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||| |   |||||||||||| ||  |||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||| |||| ||    
T  34129388 ttaaatatgttttcagcccttacattttgcaccaatttgaagaatagtccctacatttcattaaatatttttaaaatcctcacattttatctctgttatc 34129289  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  34129288 aaaattagtc 34129279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 41510070 - 41510179
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||| ||||||| | | |||||||||   || ||    
T  41510070 ttaaatatatttttaatccttacattttgcgcccctttgaagaatagtccctacattttattaaatatttctaaaatcctcatattttatctcccttatc 41510169  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  41510170 aaaattagtc 41510179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 451 - 547
Target Start/End: Original strand, 30608266 - 30608362
Alignment:
Q  451 ttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctgct 547  Q
    |||||||||||| |  |||||| |||||||| |||||||||||| |||||||||||||| | |||||||||||  ||| ||||||||||||||||||    
T  30608266 ttacattttgcgtcattttgaagaatagtccctacatttcattatatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgct 30608362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 425 - 541
Target Start/End: Complemental strand, 30608728 - 30608612
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctt 524  Q
    |||||| |||||||||||||||   ||||||||||| ||| ||||||| |||||||  || |||||||||||| ||||||||||| | |||||||||||     
T  30608728 tttagggttaaatatgtttttagaccttacattttgtgcctctttgaagaatagtctctatatttcattaaatgtttttaaaatcctcacattttatctc 30608629  T
Q  525 tgttttcaaaattagtc 541  Q
     ||| ||||||||||||    
T  30608628 cgttatcaaaattagtc 30608612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 35166954 - 35166838
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||| |||| | ||||||||||||| ||||| ||| |||| |||   ||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  35166954 ttaaatatgtctttagtgcttacattttgcgtcccttcgaaaaataatcccagcatttcattaaatgtttttaaaatcctcacattttatctccgttatc 35166855  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||||||||||    
T  35166854 aaaattagtctctgctg 35166838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 432 - 538
Target Start/End: Complemental strand, 48760203 - 48760097
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| |||||| ||| |||| |  |||||| |||||| | |||| |||||||||| ||||||||||||| ||||||||||| |||| ||    
T  48760203 ttaaatatgtttttagttcttatattgtgcgtctttttgaagaatagttcgtacaattcattaaatgtttttaaaatcttcacattttatctctgttatc 48760104  T
Q  532 aaaatta 538  Q
    |||||||    
T  48760103 aaaatta 48760097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 1791637 - 1791520
Alignment:
Q  432 ttaaatatgttttt-aattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgtttt 530  Q
    |||||||||||||| ||| |||  ||||||| |||||||||| |||||| |  |||||| ||||||| ||||||||||||| |||||||||||  ||| |    
T  1791637 ttaaatatgttttttaatccttgtattttgctcccctttgaaaaatagttctcacattttattaaatgtttttaaaatctttacattttatctccgttat 1791538  T
Q  531 caaaattagtctctgctg 548  Q
     |||||||||||||||||    
T  1791537 taaaattagtctctgctg 1791520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 541
Target Start/End: Complemental strand, 30953071 - 30952980
Alignment:
Q  450 cttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtc 541  Q
    ||||||||||||||| ||| ||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||||  ||| | ||||||||||    
T  30953071 cttacattttgcgcctcttagaagaatggtccctacatttcattaaatgtttttaaaatcctaacattttatctcggttattaaaattagtc 30952980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 432 - 523
Target Start/End: Original strand, 38759706 - 38759797
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||||| |||||| | |||| |||||||||| ||||||| ||||||| |||||||||||||||| ||||||||||| | | |||||||||    
T  38759706 ttaaatatttttttagtccttaaattttgcgcctctttgaagaatagtctatacatttcattaaatgtttttaaaatcctcaaattttatct 38759797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 435 - 544
Target Start/End: Original strand, 52398684 - 52398794
Alignment:
Q  435 aatatgtttttaattc-ttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaa 533  Q
    ||||||||||| |||| |||||||||||||| ||||||| |||||||  | ||||| ||||||||||||||||||  | | ||||||| || ||| ||||    
T  52398684 aatatgttttttattccttacattttgcgccactttgaagaatagtctctgcattttattaaatatttttaaaattcttatattttattttcgttatcaa 52398783  T
Q  534 aattagtctct 544  Q
    |||||||||||    
T  52398784 aattagtctct 52398794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 424 - 509
Target Start/End: Complemental strand, 17288469 - 17288384
Alignment:
Q  424 ttttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||| ||||||||||| ||| | | ||||||||||||  |||||||||||||||| ||||||||| ||||| |||||||||||    
T  17288469 ttttagggttaaatatgttattagtccctacattttgcgctactttgaataatagtccctacatttcaataaatgtttttaaaatc 17288384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 548
Target Start/End: Original strand, 26168014 - 26168110
Alignment:
Q  451 ttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctgctg 548  Q
    ||||||||||||||| ||| || ||||||   ||||||| ||||||||||||||||||| | |||||||||||  ||| |||||||||||||||||||    
T  26168014 ttacattttgcgcccttttaaagaatagtttctacattt-attaaatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgctg 26168110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 432 - 519
Target Start/End: Original strand, 54142327 - 54142414
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    ||||||||||| ||| | | ||||||||||||  ||||||| |||||||||||||||||| ||||| ||||||||||| | |||||||    
T  54142327 ttaaatatgttattagtccctacattttgcgcgactttgaagaatagtccatacatttcaataaatgtttttaaaatccttacatttt 54142414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 34128996 - 34129106
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||| ||||  |||||||||||| ||||||||| |||||||| || |||| ||||||  ||||||||||  | | |||||||||| ||| ||    
T  34128996 ttaaatatgtttctaataattacattttgcgtccctttgaagaatagtccctatattttattaaacgtttttaaaattctcatattttatcttcgttatc 34129095  T
Q  532 aaaattagtct 542  Q
    ||| |||||||    
T  34129096 aaagttagtct 34129106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 508
Target Start/End: Original strand, 17287489 - 17287565
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||||||| ||| | | ||||||||||||  |||| ||||||||||| ||||||||| ||||||||||||||||    
T  17287489 ttaaatatgttattagtccctacattttgcgctactttaaataatagtccttacatttcaataaatatttttaaaat 17287565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 520
Target Start/End: Complemental strand, 49426440 - 49426352
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttta 520  Q
    ||||||||||||||  | | |||||||||| |  |||| ||||||||||| ||||||||| ||||||||||||||||| | ||||||||    
T  49426440 ttaaatatgttttttgtccctacattttgctctactttaaataatagtccttacatttcaataaatatttttaaaatccttacatttta 49426352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 509
Target Start/End: Complemental strand, 35469153 - 35469075
Alignment:
Q  430 gattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||| |||| ||| ||||||||||||||  |||||||||||    
T  35469153 gattaaatatatttttaatccttacatttcgcgccccattgaagaataatccttacatttcattaaa-gtttttaaaatc 35469075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 541
Target Start/End: Complemental strand, 56106547 - 56106440
Alignment:
Q  434 aaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaa 533  Q
    ||||||||||||| |  |||||||||| ||||||||||| |||||| | || |||| ||||||| ||||||||||| |  ||||||||||  ||| | ||    
T  56106547 aaatatgtttttagtctttacattttgtgcccctttgaagaatagttcctatattttattaaatgtttttaaaatcctctcattttatctccgttattaa 56106448  T
Q  534 aattagtc 541  Q
    ||||||||    
T  56106447 aattagtc 56106440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 1791150 - 1791227
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||| |  ||| ||||| | || ||||||| |||||||||||||||||||||||| |||| ||||||    
T  1791150 ttaaatatgtttttagtcgttaaattttacacctctttgaagaatagtccatacatttcattaaatgttttaaaaatc 1791227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 523
Target Start/End: Original strand, 5544788 - 5544877
Alignment:
Q  434 aaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    |||||| |||||| | || ||||||||||| | |||||| |||||| | || |||||||||||||||||||||||  | |||||||||||    
T  5544788 aaatatctttttagtcctcacattttgcgcgcatttgaagaatagttcctatatttcattaaatatttttaaaattctcacattttatct 5544877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 547
Target Start/End: Complemental strand, 25917105 - 25917009
Alignment:
Q  453 acattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctt--tgttttcaaaattagtctctgct 547  Q
    |||||||||| |  |||||| |||| ||||||||||||||||||| |||||||||| || | ||||||||||  |||| | ||||||||| ||||||    
T  25917105 acattttgcgtctatttgaagaataatccatacatttcattaaatgtttttaaaattttcatattttatcttcgtgttatgaaaattagtgtctgct 25917009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 523
Target Start/End: Original strand, 26984152 - 26984237
Alignment:
Q  438 atgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatct 523  Q
    ||||||||| || ||| |||||||||| ||||||| |||||||| || | || ||||||| ||||||||||| | |||||||||||    
T  26984152 atgtttttagtttttatattttgcgcctctttgaagaatagtccctagactttattaaatgtttttaaaatcctcacattttatct 26984237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 509
Target Start/End: Original strand, 789886 - 789973
Alignment:
Q  421 tgattttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||||||| ||||||||||||||  | | ||||||||||||   |||||| |||||||||||||||||| | ||| |||||||||||    
T  789886 tgattttagggttaaatatgtttttggtccctacattttgcgcaattttgaa-aatagtccatacatttcaatgaatgtttttaaaatc 789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 10005456 - 10005524
Alignment:
Q  428 aggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaa 496  Q
    ||||||||||||||||||| ||| |||||||||| ||||||  ||  ||| ||||||||||||||||||    
T  10005456 aggattaaatatgtttttagttcctacattttgcaccccttcaaaatataatccatacatttcattaaa 10005524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 30048071 - 30047991
Alignment:
Q  465 cctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctg 545  Q
    |||||||| || ||| | ||||||||||||||||||||||||||| | | |||||||||  ||| | ||||||||||||||    
T  30048071 cctttgaagaacagttcttacatttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctg 30047991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 30062412 - 30062332
Alignment:
Q  465 cctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtctctg 545  Q
    |||||||| || ||| | ||||||||||||||||||||||||||| | | |||||||||  ||| | ||||||||||||||    
T  30062412 cctttgaagaacagttcttacatttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctg 30062332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 516
Target Start/End: Original strand, 34294454 - 34294536
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacat 516  Q
    |||||||| |||||| | ||||||||||| | || |||||| |||||||| ||||||||||||||| ||||||||||||| ||||    
T  34294454 ttaaatatatttttagt-cttacattttgtgtccatttgaagaatagtcc-tacatttcattaaatgtttttaaaatcttcacat 34294536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 506
Target Start/End: Original strand, 3296710 - 3296793
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaa 506  Q
    ||||||||||||||||| ||||| || | |||||||||||   ||||||| |||||||| ||||||| | ||||| ||||||||    
T  3296710 attttaggattaaatatatttttgatccctacattttgcgtgactttgaagaatagtccttacattttaataaatgtttttaaa 3296793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 10580033 - 10580119
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| | ||||||||||||||  | | |||||||||||   ||||||| |||||||| ||||||||| ||||| |||||||||||    
T  10580033 attttaaggttaaatatgtttttggtccatacattttgcgtgactttgaaaaatagtccttacatttcaataaatgtttttaaaatc 10580119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 546
Target Start/End: Original strand, 48759814 - 48759926
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| |  ||||||||| ||| | |||||| |||||||| ||| ||| ||||||| ||||||||||  | ||||||||||| |||  ||    
T  48759814 ttaaatatgtttttagtcgttacattttacgctcatttgaa-aatagtccttactttt-attaaatgtttttaaaattctcacattttatctctgtcgtc 48759911  T
Q  532 aaaattagtctctgc 546  Q
    ||||||||| |||||    
T  48759912 aaaattagtttctgc 48759926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 54168911 - 54168834
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||||| | || ||||||||   ||||||| |||| ||| ||||||| | |||||||||||||||||    
T  54168911 ttaaatatgtttttaatccctatattttgcgtgactttgaagaataatccctacattttaataaatatttttaaaatc 54168834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 508
Target Start/End: Complemental strand, 5545099 - 5545023
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||||||||||  ||| |||||||||||   ||||||| |||||| | ||||||||| ||||| ||||||||||    
T  5545099 ttaaatatgtttttgcttcctacattttgcgtgactttgaaaaatagttcttacatttcaataaatgtttttaaaat 5545023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 19310789 - 19310837
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtc 480  Q
    ||||||||||||||| | ||||||||||||||| ||||||| |||||||    
T  19310789 ttaaatatgtttttagtccttacattttgcgcctctttgaagaatagtc 19310837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 509
Target Start/End: Complemental strand, 29691836 - 29691750
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||| || ||||||||||||||  | |||||||||||||   |||| || |||||||  ||||||||| ||||| |||||||||||    
T  29691836 atttttgggttaaatatgtttttggtccttacattttgcgtgactttaaaaaatagtctttacatttcaataaatgtttttaaaatc 29691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 509
Target Start/End: Complemental strand, 38026202 - 38026118
Alignment:
Q  424 ttttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||| ||||||||||||||  ||| |||||||| |||   |||||  |||||||| ||||||||| ||||| |||||||||||    
T  38026202 ttttagggttaaatatgtttttggttcctacattttacgcaattttgag-aatagtccctacatttcaataaatgtttttaaaatc 38026118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 49424456 - 49424533
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||||| ||||| || | || |||||||||  |||||||||||||||  ||||| ||| ||||| |||||||||||    
T  49424456 ttaaatatattttttatccctatattttgcgctactttgaataatagtctttacatatcaataaatgtttttaaaatc 49424533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 508
Target Start/End: Complemental strand, 1317579 - 1317504
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaat 508  Q
    ||||||||||||||  ||| ||||||||||||   |||||| |||||||| ||||||||| | ||| ||||||||||    
T  1317579 ttaaatatgtttttggttcctacattttgcgcgattttgaa-aatagtccctacatttcaatgaatgtttttaaaat 1317504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 519
Target Start/End: Complemental strand, 54143598 - 54143502
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacatttt 519  Q
    ||||| || ||||||||||| ||| | | || ||||||| |  ||||||| |||||||| ||||||| | ||||| ||||||||||| | |||||||    
T  54143598 atttttgggttaaatatgttattagtccctatattttgcacgactttgaagaatagtccctacattttaataaatgtttttaaaatccttacatttt 54143502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 432 - 548
Target Start/End: Original strand, 5683163 - 5683279
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||||| ||||||||||||| | ||||||| |||||||| ||||||||||||||| | ||||||||| | ||||||||||||  || ||    
T  5683163 ttaaatatgtttttaatccttacattttgcgtctctttgaaaaatagtccctacatttcattaaatgtatttaaaatcctcacattttatcttcattatc 5683262  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||| ||||||    
T  5683263 aaaattagtccctgctg 5683279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 432 - 547
Target Start/End: Complemental strand, 50359527 - 50359412
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||| || | |||||||||||||||| |||||| |||||||| |  |||||||||||| ||||||||||| | ||||||||||| |||| ||    
T  50359527 ttaaatatgtttatattccttacattttgcgcccatttgaagaatagtccttttatttcattaaatgtttttaaaatcctcacattttatctctgttatc 50359428  T
Q  532 aaaattagtctctgct 547  Q
    ||||||||||||||||    
T  50359427 aaaattagtctctgct 50359412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 6751442 - 6751325
Alignment:
Q  432 ttaaatatgtttttaattcttacattttg-cgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgtttt 530  Q
    ||||||||||||||| |  |||||||||| || |||||| || || ||||| ||||||||||||||| ||||||||||| | |||||||||||||||| |    
T  6751442 ttaaatatgtttttagtcattacattttggcgtccctttaaagaaaagtccttacatttcattaaatttttttaaaatcctcacattttatctttgttat 6751343  T
Q  531 caaaattagtctctgctg 548  Q
    ||||||||||||||||||    
T  6751342 caaaattagtctctgctg 6751325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 48155367 - 48155258
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||||| |||| ||||||||| |||||||| ||| || | || |||||||||||| ||||||||||||| ||||||||||| |||| ||    
T  48155367 ttaaatatgtttttaatccttatattttgcgctcctttgaagaattgttcctatatttcattaaatgtttttaaaatcttcacattttatctatgttatc 48155268  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  48155267 aaaattagtc 48155258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 432 - 551
Target Start/End: Original strand, 18179881 - 18180000
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||| ||||||||| | |||||||||||| |||||||||| |||||||| || |||||||||| | ||||||||||| | |||||||||||  ||| ||    
T  18179881 ttaaacatgtttttagtccttacattttgcacccctttgaaaaatagtccttatatttcattaattgtttttaaaatcctcacattttatctccgttatc 18179980  T
Q  532 aaaattagtctctgctgcta 551  Q
    ||||||||||||| ||||||    
T  18179981 aaaattagtctctactgcta 18180000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 5172747 - 5172856
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| |||||||||||||||| | |||||| |||||||  ||||||||||||||| ||||||||||| | |||||||||||  ||| ||    
T  5172747 ttaaatatgtttttagttcttacattttgcgctcatttgaagaatagtctctacatttcattaaatgtttttaaaatccttacattttatctacgttatc 5172846  T
Q  532 aaaattagtc 541  Q
    ||| ||||||    
T  5172847 aaatttagtc 5172856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 9880486 - 9880595
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||||  ||||||||| || ||||  ||||||||||||||| ||||||||||| | |||||||||||| ||| ||    
T  9880486 ttaaatatgtttttagtccttacattttgcatccctttgaagaaaagtctctacatttcattaaatgtttttaaaatcctcacattttatcttcgttatc 9880585  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  9880586 aaaattagtc 9880595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 548
Target Start/End: Complemental strand, 9880887 - 9880762
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    |||||| | |||||||||||||||||||||||||||||||| | |||||| ||||||   || |||| ||||||| ||||||||||  | ||||||||||    
T  9880887 attttatggttaaatatgtttttaattcttacattttgcgctcatttgaagaatagtttctatattttattaaatgtttttaaaattctcacattttatc 9880788  T
Q  523 tttgttttcaaaattagtctctgctg 548  Q
    | |||| |||||||||||| ||||||    
T  9880787 tctgttatcaaaattagtccctgctg 9880762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 432 - 541
Target Start/End: Complemental strand, 18180366 - 18180257
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||||||||||||  ||| |||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||| | | |||||||||  ||| ||    
T  18180366 ttaaatatgtttttaatctttatattttgcgccactttgaagaatagtccatacattttattaaatgtttttaaaatcctcatattttatctccgttatc 18180267  T
Q  532 aaaattagtc 541  Q
    ||||||||||    
T  18180266 aaaattagtc 18180257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 3591425 - 3591309
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    |||||||| |||||| | |||||||||||||| | |||||| |||||||||||||||| ||||||| ||||||||||| | |||||||||||   || |     
T  3591425 ttaaatatatttttagtccttacattttgcgctcatttgaagaatagtccatacattttattaaatgtttttaaaatcctcacattttatctccattata 3591326  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||| ||||||    
T  3591325 aaaattagtccctgctg 3591309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 19895402 - 19895512
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||  || | |||||| |||||||||||||||| ||||||| ||||||||| | | |||||||||||  ||| ||    
T  19895402 ttaaatatgtttttagtccttacattttatgctcgtttgaagaatagtccatacatttaattaaatgtttttaaaaccctcacattttatctccgttatc 19895501  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  19895502 aaaattagtct 19895512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 423 - 548
Target Start/End: Original strand, 50359118 - 50359242
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||| || |||||||| |||||| | |||| ||||||||||  || ||| |||||||| ||||||||||||||| ||||| ||||||| |||||||||     
T  50359118 atttttgggttaaatatttttttagtccttatattttgcgccaattcgaagaatagtccctacatttcattaaatgttttttaaatcttcacattttatt 50359217  T
Q  523 tttgttttcaaaattagtctctgctg 548  Q
    |  ||| |||||||||| ||||||||    
T  50359218 tccgttatcaaaattag-ctctgctg 50359242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 509
Target Start/End: Complemental strand, 1501076 - 1500992
Alignment:
Q  425 tttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| ||||||||||||||| | | || ||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||    
T  1501076 tttagggttaaatatgtttttagtccctatattttgcgctcttttgaagaatagtccctacatttcattaaatgtttttaaaatc 1500992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 5683649 - 5683533
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||| ||||| || |  |||||| |||||||| ||||||||||||||||||||||||||| |   |||||||||  | | ||    
T  5683649 ttaaatatgtttttagtccttatattttacgtctttttgaagaatagtccctacatttcattaaatatttttaaaatcctcgtattttatctccggtatc 5683550  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||| ||||||    
T  5683549 aaaattagtcactgctg 5683533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 548
Target Start/End: Complemental strand, 31436471 - 31436355
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||| ||||| | ||||||||||| | || |||||| |||||||  || |||| ||||||| ||||||||||  | |||||||||||  ||| ||    
T  31436471 ttaaatatgattttagtccttacattttgtgtccttttgaagaatagtcactatattttattaaatgtttttaaaattatcacattttatctccgttatc 31436372  T
Q  532 aaaattagtctctgctg 548  Q
    |||||||||||||||||    
T  31436371 aaaattagtctctgctg 31436355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 432 - 547
Target Start/End: Original strand, 48154976 - 48155090
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||||| |||| ||||| |||| |||| || |||||||| ||||||| ||||||| ||||||||||| | | |||||||||  | | ||    
T  48154976 ttaaatatgtttttaatccttatattttacgccgcttt-aagaatagtccttacattttattaaatgtttttaaaatcctcatattttatctccgatatc 48155074  T
Q  532 aaaattagtctctgct 547  Q
    ||||||| ||||||||    
T  48155075 aaaattaatctctgct 48155090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 432 - 538
Target Start/End: Complemental strand, 4288523 - 4288422
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | |||| |||||||||||||||||| |||||||| ||     |||||||| ||||||||||| | ||||||||| || ||| ||    
T  4288523 ttaaatatgtttttagtccttatattttgcgcccctttgaagaatagtcccta-----cattaaatgtttttaaaatcctcacattttatattcgttatc 4288429  T
Q  532 aaaatta 538  Q
    |||||||    
T  4288428 aaaatta 4288422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 541
Target Start/End: Original strand, 6751040 - 6751158
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatc 522  Q
    ||||| ||||||||||||| |||| |  |||||||||| ||| ||||||| |||| ||| || |||||||||||| |||| |||||| |  |||||||||    
T  6751040 atttttggattaaatatgtgtttagtctttacattttgtgcctctttgaagaataatccttatatttcattaaatgttttaaaaatcatcgcattttatc 6751139  T
Q  523 tttgttttcaaaattagtc 541  Q
    |  ||| ||||||||||||    
T  6751140 tccgttatcaaaattagtc 6751158  T

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Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 538
Target Start/End: Original strand, 47541527 - 47541626
Alignment:
Q  439 tgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaatta 538  Q
    |||||||| | ||||||||||  | ||||||||| |||||||| || |||||||||||| ||||||||||| | ||||||||| ||  || |||||||||    
T  47541527 tgtttttagtccttacattttatgtccctttgaagaatagtccctatatttcattaaatgtttttaaaatcctcacattttatattcattatcaaaatta 47541626  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 538
Target Start/End: Original strand, 19976162 - 19976272
Alignment:
Q  428 aggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgt 527  Q
    ||||||||||||||||||| |  |||||||||||||  ||||||| |||||| | ||  ||| ||||||| |||||||||||   ||||||||||| | |    
T  19976162 aggattaaatatgtttttagtcgttacattttgcgcttctttgaagaatagttcttattttttattaaatgtttttaaaatccccacattttatctctat 19976261  T
Q  528 tttcaaaatta 538  Q
    | |||||||||    
T  19976262 tatcaaaatta 19976272  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 510
Target Start/End: Original strand, 18180045 - 18180132
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatct 510  Q
    |||||| | ||||||||||||||| |   |||||||||||   ||||||| || ||||| | ||||||| ||||||||||||||||||    
T  18180045 attttaaggttaaatatgtttttagtcactacattttgcgtgactttgaaaaacagtccttgcatttcaataaatatttttaaaatct 18180132  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 542
Target Start/End: Complemental strand, 19895853 - 19895778
Alignment:
Q  467 tttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttcaaaattagtct 542  Q
    |||||| |||||||  ||||||| ||||||| ||||||||||  | | |||||||||| ||| |||||||||||||    
T  19895853 tttgaagaatagtctctacattttattaaatgtttttaaaattctcatattttatcttcgttatcaaaattagtct 19895778  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 509
Target Start/End: Complemental strand, 3591261 - 3591175
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||||| | ||||||||||||||  | | |||||| ||||   ||||||| |||||||| ||||||||| ||||| |||||||||||    
T  3591261 attttaaggttaaatatgtttttggtccctacattgtgcgtgactttgaaaaatagtccttacatttcaataaatgtttttaaaatc 3591175  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 509
Target Start/End: Complemental strand, 45666038 - 45665952
Alignment:
Q  423 attttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    |||| ||||||||||||||| ||  | | ||||||||| || ||||| || |||||| | ||| ||||| |||||||||||||||||    
T  45666038 atttaaggattaaatatgttattggtccctacattttgtgctcctttaaaaaatagttcttacgtttcaataaatatttttaaaatc 45665952  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 37717883 - 37717807
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||| | | |||||||| |||  ||||||| |||||||| ||||||||| ||||  |||||||||||    
T  37717883 ttaaatatgtttttagtccctacattttacgcaactttgaa-aatagtccttacatttcaataaaggtttttaaaatc 37717807  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 45664689 - 45664766
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatc 509  Q
    ||||||||||||||| | | |||||||| ||| | |||||| |||||||  ||||||| | ||||| |||||||||||    
T  45664689 ttaaatatgtttttagtccctacattttacgctcatttgaagaatagtctctacattttaataaatgtttttaaaatc 45664766  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 521
Target Start/End: Complemental strand, 42723347 - 42723254
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacat----ttcattaaatatttttaaaatcttaacattttat 521  Q
    ||||||||||||||||| |||| ||||||||| ||||| || |||| | |||| ||    || ||||||| ||||||||||| | |||||||||    
T  42723347 ttaaatatgtttttaatccttatattttgcgctcctttaaagaataattcatatatttaatttattaaatgtttttaaaatcctcacattttat 42723254  T

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Target: scaffold0063 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 431 - 547
Target Start/End: Original strand, 34793 - 34909
Alignment:
Q  431 attaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgtttt 530  Q
    |||||||||||||||| | |||| |||||||| |  |||||||||| |||||||||||||||||||| |||||||| |  | |||||||||||  ||| |    
T  34793 attaaatatgtttttagtccttatattttgcgtctatttgaataatggtccatacatttcattaaatgtttttaaagtactcacattttatctccgttat 34892  T
Q  531 caaaattagtctctgct 547  Q
    |||||||||||||||||    
T  34893 caaaattagtctctgct 34909  T

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Target: scaffold0063; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 540
Target Start/End: Complemental strand, 35280 - 35172
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| | ||||||||||||| ||||||||| |||||||  ||||||| ||| ||| ||||||||||| | |||||||||||  ||| |     
T  35280 ttaaatatgtttttagtccttacattttgcgtccctttgaagaatagtctctacattttattgaatgtttttaaaatcctcacattttatctcggttatg 35181  T
Q  532 aaaattagt 540  Q
    |||||||||    
T  35180 aaaattagt 35172  T

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Target: scaffold0933 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 493 - 603
Alignment:
Q  432 ttaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaaatcttaacattttatctttgttttc 531  Q
    ||||||||||||||| |||||| ||||||||  | |||||  | | || | ||||||||||||||| |||||||||| || ||||||||| |||||| ||    
T  493 ttaaatatgtttttagttcttagattttgcgatcatttgacgagttgttcttacatttcattaaatgtttttaaaattttcacattttatttttgttatc 592  T
Q  532 aaaattagtct 542  Q
    |||||||||||    
T  593 aaaattagtct 603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 506
Target Start/End: Complemental strand, 25936 - 25856
Alignment:
Q  426 ttaggattaaatatgtttttaattcttacattttgcgcccctttgaataatagtccatacatttcattaaatatttttaaa 506  Q
    ||||| ||||||||||||||| | | |||||||| ||| | |||||  |||||||| ||||||| | ||||||||||||||    
T  25936 ttagggttaaatatgtttttagtccctacattttacgctcttttgataaatagtccctacatttaagtaaatatttttaaa 25856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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