View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_8 (Length: 538)
Name: NF18899_low_8
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 15 - 525
Target Start/End: Original strand, 44543733 - 44544247
Alignment:
| Q |
15 |
tttagattgtgttaacttttttcaacattggactgactatttttcttaataaatatttagtcaaatggtttgaatgagcattagattaataccagaaaag |
114 |
Q |
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| T |
44543733 |
tttagattgtgttaacttttttcaacattggactgactatttttcttaataaatatttagtcaaatggtttgaatgagcattagattaataccagaaaag |
44543832 |
T |
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| Q |
115 |
aagtgattgtgcagaatgctaatgtattgtagcgaccaaaatatgtatcagagaagaaagcaccaagcaaggtagcaaagttggtactaccactgaagat |
214 |
Q |
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| T |
44543833 |
aagtgattgtgcagaatgctaatgtattgtagcgaccaaaatatgtatcagagaagaaagcaccaagcaaggtagcaaagttggtactgccactgaagat |
44543932 |
T |
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| Q |
215 |
attgatgatgtttgcagctgtaatgtttttcaggttgaatacagttgtaagatagaccaacaagtttgctaatgttccaatagctcctaatttttcaaaa |
314 |
Q |
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| T |
44543933 |
attgatgatgtttgcagctgtaatgtttttcaggttgaatacagttgtaagatagaccaacaagtttgctaatgttccaatggctcctaatttttcaaaa |
44544032 |
T |
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| Q |
315 |
gtttcatttcctgttcataaaaaatttcaag----cataattagactaaaaaatatagagaaaaattgatagaaagagtgtgtacattaattacctatga |
410 |
Q |
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| T |
44544033 |
gtttcatttcctgttcataaaaattttcaagtataaataattagactaaaaaatatagagaaaaattgatagaaagagtgtgtacattaattacctatga |
44544132 |
T |
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| Q |
411 |
tgaaaggcatgaccttccagcctctatggatgatcttaggatcatcatttgtttcatgtttctcactattttccatgttgttttctttctcagttgtctt |
510 |
Q |
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| T |
44544133 |
tgaaaggcatgaccttccagcctctatggatgatcttaggatcatcatttgtttcatgtttctcactattttccatgttgttttctttctcagttgtctt |
44544232 |
T |
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| Q |
511 |
cattgttgttccttc |
525 |
Q |
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| T |
44544233 |
cattgttgttccttc |
44544247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 44554557 - 44554708
Alignment:
| Q |
123 |
gtgcagaatgctaatgtattgtagcgaccaaaatatgtatcagagaagaaagcaccaagcaaggtagcaaagttggtactaccactgaagatattgatga |
222 |
Q |
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| T |
44554557 |
gtgcagaatgacagtgtcttgtagcgaccaaaaaaggcatcagaggaaaaagctcctatcaatgttgcaaagttggtacttccgttaaagatgttgataa |
44554656 |
T |
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| Q |
223 |
tgtttgcagctgtaatgtttttcaggttgaatacagttgtaagatagaccaa |
274 |
Q |
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| T |
44554657 |
tatttgtagctgcgatgttttccaagttgaataccgtagtaagatagaccaa |
44554708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 327
Target Start/End: Original strand, 44565399 - 44565585
Alignment:
| Q |
141 |
ttgtagcgaccaaaatatgtatcagagaagaaagcaccaagcaaggtagcaaagttggtactaccactgaagatattgatgatgtttgcagctgtaatgt |
240 |
Q |
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| T |
44565399 |
ttgtagcgtccaaaataagtatcacatagaaaagctcctagcaaggtaactagattagcacttccattgaagatattgacaatatttgtggctgtaatac |
44565498 |
T |
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| Q |
241 |
ttttcaggttgaatacagttgtaagatagaccaacaagtttgctaatgttccaatagctcctaatttttcaaaagtttcatttcctg |
327 |
Q |
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| T |
44565499 |
tgctaaggttgaagactgatgtaagatagaccaagaggtttgctaaggtaccaatggctcctagcttctcaaatgtttcatttcctg |
44565585 |
T |
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