View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18899_low_9 (Length: 537)
Name: NF18899_low_9
Description: NF18899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18899_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 6686444 - 6685925
Alignment:
| Q |
1 |
agatctgtgtacgtccgataacaaccagttctaattgcttagaatctgatcatattattattggtagaactgatgagaaaatgaagatggtaagcatgct |
100 |
Q |
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| T |
6686444 |
agatctgtgtacgtctgataacaaccagttctaattgcttagaatctgatcatattattattggtagaactgatgagaaaatgaagatggtaagcatgtt |
6686345 |
T |
|
| Q |
101 |
gcttgaacaagactccaatgttaatgttatttcctctgttgctattgttggtctttgtggtatatataggcaagaccactcttgctcaaatggtgtacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6686344 |
gcttgaacaagactccaatgttaatgttatttcctctgttgctattgttggtcttggtggtatatataggcaagactactcttgctcaaatggtgtacaa |
6686245 |
T |
|
| Q |
201 |
tgatgctaaggtcaaaggcttatttgaaaaccaagtttggtttcatgtttcttactcattcaatgtccaagcttttgcgaagcaaatcttacaagcttta |
300 |
Q |
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| T |
6686244 |
tgatgctaaggtcaaaggcttatttgaaaaccaagtttggtttcatgtttcttactcattcgatatccaagcttttgcgaagcaaatcttacaagcttta |
6686145 |
T |
|
| Q |
301 |
tttggagatgatatcaatgatcaacaagaaccattcgaacaacacttgcttcttcttcgttacaaggtatttgttggtgttggacgatgtctgaaacttg |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6686144 |
tttggagatgatatcaatgatcaacgagaaccattcgaacaacactcgcttcttgttcgttacaaggtatttgttggtgttggacgatgtatgaaacttg |
6686045 |
T |
|
| Q |
401 |
acttgtgaaaaatggaatcaactcacaagttctttgatgtgtggggtggcttgcgaaactaagatttctattgacaactcgttgtagaattgtggccgag |
500 |
Q |
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| T |
6686044 |
acttgtgaaaaatggaatcaactcacaagttctttgatgtgtggggtggcttgcgaaactaagatttctattgacaactcgttgtagaattgtggccgag |
6685945 |
T |
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| Q |
501 |
gaaattggagtcaactctct |
520 |
Q |
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|||||||||||||||||||| |
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| T |
6685944 |
gaaattggagtcaactctct |
6685925 |
T |
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