View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18900_high_2 (Length: 421)

Name: NF18900_high_2
Description: NF18900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18900_high_2
NF18900_high_2
[»] chr3 (11 HSPs)
chr3 (35-402)||(3701535-3701900)
chr3 (37-346)||(3712834-3713146)
chr3 (49-339)||(3705292-3705589)
chr3 (85-340)||(3719403-3719661)
chr3 (98-346)||(3707854-3708102)
chr3 (171-244)||(26807448-26807521)
chr3 (171-244)||(32775271-32775344)
chr3 (171-244)||(32814957-32815030)
chr3 (171-243)||(32772692-32772764)
chr3 (179-313)||(3716421-3716549)
chr3 (179-232)||(41845773-41845826)
[»] chr8 (8 HSPs)
chr8 (165-346)||(12482994-12483176)
chr8 (171-313)||(2105865-2106006)
chr8 (171-338)||(12289395-12289563)
chr8 (166-243)||(12670511-12670588)
chr8 (171-346)||(11949326-11949501)
chr8 (171-242)||(939435-939506)
chr8 (165-292)||(12482728-12482856)
chr8 (205-246)||(11949182-11949223)
[»] chr5 (4 HSPs)
chr5 (171-313)||(38327774-38327914)
chr5 (171-305)||(38322602-38322733)
chr5 (171-243)||(31965398-31965470)
chr5 (171-242)||(8219735-8219806)
[»] chr7 (2 HSPs)
chr7 (171-246)||(25796173-25796248)
chr7 (179-232)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (171-246)||(19185992-19186067)
chr4 (171-242)||(26741372-26741443)
chr4 (171-242)||(30161835-30161906)
chr4 (171-242)||(51386264-51386335)
[»] chr1 (5 HSPs)
chr1 (171-313)||(43848981-43849119)
chr1 (165-242)||(27981044-27981121)
chr1 (171-243)||(30953117-30953189)
chr1 (179-232)||(39755137-39755190)
chr1 (179-232)||(39760491-39760544)
[»] chr6 (1 HSPs)
chr6 (171-242)||(21882908-21882979)
[»] chr2 (4 HSPs)
chr2 (171-242)||(4767493-4767564)
chr2 (171-242)||(38551329-38551400)
chr2 (179-232)||(14428572-14428625)
chr2 (179-232)||(34962092-34962145)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 35 - 402
Target Start/End: Original strand, 3701535 - 3701900
Alignment:
Q  35 cattcaaatcagtgcattcctccaattttgatatgaagaaatttggacagttaagatttgagaagtttcctttgtcatattatcattgtagtatctagat 134  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3701535 cattcaaatcagcgcattcctccaattttgatattaagaaatttggacagttaagatttgagaagtttcctttgtcatattatcattatagtatctagat 3701634  T
Q  135 gttaaatatctaacaacattttgaatagagcaacatagcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccgg 234  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3701635 gttaaatatctaacaacattttgaatagaacaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccgg 3701734  T
Q  235 ctggtgcaatatcgagggagctatgatgataatatttgtggtgttcggtaacatcacttctcctgaaacattggatgaataccatacccctgagctcctt 334  Q
    |||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3701735 ctggtgcaaatttgagggagctatgatgataatatctgtggtgttcggtaacatcacttctcctgaaacattggatgaataccatacccctgagctcct- 3701833  T
Q  335 ctttttatttttgcaaatttcaagtagtgtannnnnnngttgtatattattgttaattctgttgaatt 402  Q
     |||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||    
T  3701834 -tttttatttttgcaaatttcaagtcgtgtatttttttgttgtatattattgttaattctgttgaatt 3701900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 37 - 346
Target Start/End: Original strand, 3712834 - 3713146
Alignment:
Q  37 ttcaaatcagtgcattcctccaattttgatatgaagaaatttggacagttaagatttgagaagtttcctttgtcatattatcattgtagtatctagatgt 136  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  3712834 ttcaattcagtgcatacctccaattttgatatcaagaaatttggataattaagatttgagaagtttcctttgtcatattatcattgtagtctatagatgt 3712933  T
Q  137 taaatatctaacaacattttgaata---gagcaacatagcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccg 233  Q
    ||||||||||| |||||| | |  |   || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3712934 taaatatctaataacattatcatcaaatgaacaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccg 3713033  T
Q  234 gctggtgcaatatcgagggagctatgatgataatatttgtggtgttcggtaacatcacttctcctgaaacattggatgaataccatacccctgagctcct 333  Q
    |||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  || || |||||||| |    
T  3713034 gctggtgcatattcgagggagctatgatgataatatctgtggtgttcggtaacatcacttctcctgaaacattggatgaaaataatgcctctgagctctt 3713133  T
Q  334 tctttttattttt 346  Q
    |||||||||||||    
T  3713134 tctttttattttt 3713146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 49 - 339
Target Start/End: Original strand, 3705292 - 3705589
Alignment:
Q  49 cattcctccaattttgatatgaagaaatttggacagttaagatttgagaagtttcctttgtcatattatca----ttgtagtatctagatgttaaatatc 144  Q
    ||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||| |||||||||||||    ||||||| | |||||  |||||||     
T  3705292 cattcctccaattttgacatcaagaaatttggacaattaagattttagaagtttcctctgtcatattatcaatcattgtagtctgtagataataaatatg 3705391  T
Q  145 taacaacattttga---atagagcaacatagcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgc 241  Q
    ||| |||||| | |   || ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3705392 taataacattatcatcaattgaataacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgc 3705491  T
Q  242 aatatcgagggagctatgatgataatatttgtggtgttcggtaacatcacttctcctgaaacattggatgaataccatacccctgagctccttctttt 339  Q
    ||| | |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |  ||||| |||||||| |||||||    
T  3705492 aattttgagggagctatgatgataatatatgtgttgttcggtaacatcacttctcctgaaacattggatgaaaataatacctctgagctctttctttt 3705589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 85 - 340
Target Start/End: Original strand, 3719403 - 3719661
Alignment:
Q  85 ttaagatttgagaagtttcctttgtcatattatcattgtagtatctagatgttaaatatctaacaacattttgaata-gagcaacatagcaccagtggtc 183  Q
    ||||||||| |||||||| || ||||||| |||||||||||  ||||||||||||| |||||| || ||| | || | |  ||||| |||||||||||||    
T  3719403 ttaagattttagaagttttctgtgtcatactatcattgtaggctctagatgttaaagatctaataatattgtcaaaatgtacaacaaagcaccagtggtc 3719502  T
Q  184 tagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatcgagggagctatgatgataatatttgtggtg-ttcgg 282  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||||||| || |||||| ||| |||||    
T  3719503 tagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatttgcagggagctatgatgaaaacatttgttgtgtttcgg 3719602  T
Q  283 t-aacatcacttctcctgaaacattggatgaataccatacccctgagctccttcttttt 340  Q
    | ||||||| | |||||||||||| ||||||| | |||||| ||||||||| |||||||    
T  3719603 taaacatcattcctcctgaaacataggatgaaaaacatacctctgagctccatcttttt 3719661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 98 - 346
Target Start/End: Original strand, 3707854 - 3708102
Alignment:
Q  98 agtttcctttgtcatattatcattgtagtatctagatgttaaatatctaacaacattttgaatagagcaacat---agcaccagtggtctagtggtagaa 194  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||| || ||| |||||| | |||||| |||||    ||||||||||||||||||||||||    
T  3707854 agttttctttgtcatattatcattgcagtgtctagatgttaaagatgtaataacattatcaatagaacaacaacaaagcaccagtggtctagtggtagaa 3707953  T
Q  195 tagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatcgagggagctatgatgataatatttgtggtgttcggtaacatcacttc 294  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    || ||| |||||| |||||||||| |||| |||||||| || |     
T  3707954 tagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatat---tggggctgtgatgaaaatatttgtgatgtttggtaacattacctt 3708050  T
Q  295 tcctgaaacattggatgaataccatacccctgagctccttctttttattttt 346  Q
    ||||||| ||| ||||||| |  ||||| ||||||||||| ||||| |||||    
T  3708051 tcctgaatcatcggatgaaaataatacctctgagctcctttttttttttttt 3708102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 26807521 - 26807448
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26807521 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 26807448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 32775271 - 32775344
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32775271 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 32775344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 32814957 - 32815030
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32814957 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 32815030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 32772692 - 32772764
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaa 243  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||    
T  32772692 agcacaagtggtttaatggtagaatagtaccctgccacggtacagacttgggtttgattcctggctgctgcaa 32772764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 313
Target Start/End: Original strand, 3716421 - 3716549
Alignment:
Q  179 tggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatcgagggagctatgatgataatatttgtggtgt 278  Q
    ||||||||||||||||||||||||      ||| |||| | ||||||||||||| ||||||||||  || |||||| | |||| | |||| || || | |    
T  3716421 tggtctagtggtagaatagtaccc------ggttcagatccgggttcgattcccagctggtgcaaattctagggagttgtgataaaaataattctgattt 3716514  T
Q  279 tcggtaacatcacttctcctgaaacattggatgaa 313  Q
    ||||||||||||||| |||||||| ||||||||||    
T  3716515 tcggtaacatcacttgtcctgaaaaattggatgaa 3716549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 41845826 - 41845773
Alignment:
Q  179 tggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattccc 232  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  41845826 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 41845773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 346
Target Start/End: Complemental strand, 12483176 - 12482994
Alignment:
Q  165 caacatagcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatc-gagggagctatgatga 263  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || || |||||||||||||    
T  12483176 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaacttcagatggagctatgatga 12483077  T
Q  264 taatatttgtggtgttcggtaacatcacttctcctgaaacattggatga-ataccatacccctgagctccttctttttattttt 346  Q
    | | || |||| |||| ||||||||||||| |||||||| | ||||||| |||  ||||||||||||||||||||||| |||||    
T  12483076 tgacatctgtgatgttaggtaacatcacttatcctgaaatactggatgacata-tatacccctgagctccttcttttttttttt 12482994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 2105865 - 2106006
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca-atatcgagggagctatgatgataatat 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | | ||||  |||||||||| |||||    
T  2105865 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcacctgtggagg--gctatgatgaaaatat 2105962  T
Q  270 ttgtggtgttcggtaacatcacttctcctgaaacattggatgaa 313  Q
    ||||| |||||||||||||||| | ||||||| |||||||||||    
T  2105963 ttgtgatgttcggtaacatcacctatcctgaaccattggatgaa 2106006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 171 - 338
Target Start/End: Original strand, 12289395 - 12289563
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatc--gagggagctatgatgataata 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  || ||||| |||||||||||     
T  12289395 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat-tcgtgaaggagcaatgatgataatg 12289493  T
Q  269 tttgtggtgttcggtaacatcacttctcctgaaacattggatga-ataccatacccctgagctccttcttt 338  Q
    ||||||||||| ||||||||||| | |||| ||| | ||||||| |||  | |||||||||||||||||||    
T  12289494 tttgtggtgttgggtaacatcacctatcctcaaataatggatgacata-tacacccctgagctccttcttt 12289563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 12670588 - 12670511
Alignment:
Q  166 aacatagcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaa 243  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12670588 aacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 12670511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 171 - 346
Target Start/End: Complemental strand, 11949501 - 11949326
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaa-tatcgagggagctatgatgataatat 269  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||   | ||  |||||||||||||||| |    
T  11949501 agcaccagtggtctagtggtagaatagtaccctgccacgctacagacccgggttcaattcctggctggtgcaacccttgaatgagctatgatgataatgt 11949402  T
Q  270 ttgtggtgttcggtaacatcacttctcctgaaacattggatgaataccatacccctgagctccttctttttattttt 346  Q
    |||||||||| ||||||||| | | |||||||| | | |||||  |  ||||| ||||||||||||| ||| |||||    
T  11949401 ttgtggtgttgggtaacatc-cctatcctgaaaaacttgatgataaatatacctctgagctccttctgttttttttt 11949326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 939506 - 939435
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  939506 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 939435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 12482856 - 12482728
Alignment:
Q  165 caacatagcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatc-gagggagctatgatga 263  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||   | ||  ||||||||||||    
T  12482856 caacaaagcaccagtggtctagtggtagaatagtaccctgccatggtacagacccgggttcaattcctggctggtgcaacccctgaatgagctatgatga 12482757  T
Q  264 taatatttgtggtgttcggtaacatcact 292  Q
    ||||   ||||||||| ||||||||||||    
T  12482756 taatgcatgtggtgttgggtaacatcact 12482728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 11949223 - 11949182
Alignment:
Q  205 ccacggtacagacctgggttcgattcccggctggtgcaatat 246  Q
    ||||||| |||||| |||||| ||||||||||||||||||||    
T  11949223 ccacggttcagacccgggttcaattcccggctggtgcaatat 11949182  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 38327774 - 38327914
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatcgagggagctatgatgataatatt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    |  ||||| |||||| ||||||    
T  38327774 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcatttctta--gagctgtgatgaaaatatt 38327871  T
Q  271 tgtggtgttcggtaacatcacttctcctgaaacattggatgaa 313  Q
    ||||||||| ||||||||||| |  ||||||||| ||||||||    
T  38327872 tgtggtgttgggtaacatcaccttccctgaaacactggatgaa 38327914  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 305
Target Start/End: Original strand, 38322602 - 38322733
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatcgagggagctatgatgataatatt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   ||  ||||| |||||| |||| |    
T  38322602 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcatttctga--gagctgtgatgaaaatagt 38322699  T
Q  271 tgtggtgttcggtaacatcacttctcctgaaacat 305  Q
    ||||||||| ||| ||||||| | |||||||||||    
T  38322700 tgtggtgttgggt-acatcacctttcctgaaacat 38322733  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 31965470 - 31965398
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31965470 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 31965398  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 8219735 - 8219806
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8219735 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 8219806  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 25796173 - 25796248
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatat 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25796173 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatat 25796248  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 45343134 - 45343081
Alignment:
Q  179 tggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattccc 232  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  45343134 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 45343081  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 19185992 - 19186067
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatat 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19185992 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatat 19186067  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 26741443 - 26741372
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26741443 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 26741372  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 30161835 - 30161906
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30161835 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 30161906  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 51386335 - 51386264
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51386335 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 51386264  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 313
Target Start/End: Complemental strand, 43849119 - 43848981
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaatatcgagggagctatgatg-ataatat 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |     ||||| ||||| || ||||    
T  43849119 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattt-----gagctgtgatgaattatat 43849025  T
Q  270 ttgtggtgttcggtaacatcacttctcctgaaacattggatgaa 313  Q
    |  || |||| |||||||||| || |||||||||| ||||||||    
T  43849024 tcatgatgttgggtaacatcaattatcctgaaacactggatgaa 43848981  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 27981044 - 27981121
Alignment:
Q  165 caacatagcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27981044 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 27981121  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 30953189 - 30953117
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgcaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30953189 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 30953117  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 39755137 - 39755190
Alignment:
Q  179 tggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattccc 232  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39755137 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39755190  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 39760491 - 39760544
Alignment:
Q  179 tggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattccc 232  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39760491 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39760544  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 21882908 - 21882979
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21882908 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 21882979  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 4767564 - 4767493
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4767564 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 4767493  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 38551329 - 38551400
Alignment:
Q  171 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattcccggctggtgca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38551329 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 38551400  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 14428572 - 14428625
Alignment:
Q  179 tggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattccc 232  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  14428572 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 14428625  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 34962092 - 34962145
Alignment:
Q  179 tggtctagtggtagaatagtaccctgccacggtacagacctgggttcgattccc 232  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  34962092 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 34962145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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