View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18900_high_5 (Length: 267)
Name: NF18900_high_5
Description: NF18900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18900_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 15047347 - 15047253
Alignment:
| Q |
10 |
ataattctgcatgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggtgaatgtcaggttttggaattatgactt |
104 |
Q |
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| T |
15047347 |
ataattctacatgcatattgatataaataattgttggatggattagataaatagatatctaatgtggtgaatggcatgtcttggaattatgactt |
15047253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 17879609 - 17879560
Alignment:
| Q |
10 |
ataattctgcatgcatattgttttaaataattgttggatgggttagataa |
59 |
Q |
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| T |
17879609 |
ataattctacatgcatattgttttaaataattgttggattggttagataa |
17879560 |
T |
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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 15014577 - 15014517
Alignment:
| Q |
19 |
catgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggtga |
79 |
Q |
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| T |
15014577 |
catgcatattgctgtacataactgctggatgggttagataaatagatatttatcgtggtga |
15014517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 14773173 - 14773115
Alignment:
| Q |
19 |
catgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggt |
77 |
Q |
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| T |
14773173 |
catgcatattgatgtacttcattgtttgatgggttagataaatagatattttatgtggt |
14773115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 15046966 - 15046916
Alignment:
| Q |
197 |
gctttaatcttcagattaacatttgattaagcagattgacagctagtttaa |
247 |
Q |
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| T |
15046966 |
gctttgatcttcagattgacatttaattaagcagattgaaaggtagtttaa |
15046916 |
T |
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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 54157236 - 54157140
Alignment:
| Q |
21 |
tgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggtgaatgtcaggttttggaattatgacttcattcaaacttttt |
118 |
Q |
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| T |
54157236 |
tgcatattgctttacataattgttggatgg-ttagataaatagctatttaatgtggtgaatgacacatcttgttattatgatttcatccaaacttttt |
54157140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 53869107 - 53869166
Alignment:
| Q |
23 |
catattgttttaaataattgttggatgggttagataaatagatatttaatgtggtgaatgt |
83 |
Q |
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| T |
53869107 |
catattgctgtagataattgtttgatgg-ttaaataaatagctatttaatgtggtgaatgt |
53869166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 36877492 - 36877571
Alignment:
| Q |
164 |
ttatatagcatgtagtagtttgtgtatatgtatgctttaatcttcagattaacatttgattaagcagattgacagctagttt |
245 |
Q |
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| T |
36877492 |
ttatatagcatgcagtagtctatgtatat--atgctttaatctttaaattgaaatttgattaagctgattgaaaactagttt |
36877571 |
T |
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