View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18900_high_7 (Length: 251)
Name: NF18900_high_7
Description: NF18900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18900_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 33120464 - 33120302
Alignment:
| Q |
74 |
aaagctatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaac |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120464 |
aaagctatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaac |
33120365 |
T |
|
| Q |
174 |
tgttacaaactccaactgaaataacagtggtgctttcgtttctgatttttcccaagggtgttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33120364 |
tgttacaaactccaactgaaataacagtggtgctttcgtttctgatttttcccaaggatgttc |
33120302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University