View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18900_high_8 (Length: 249)
Name: NF18900_high_8
Description: NF18900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18900_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 30807103 - 30806895
Alignment:
| Q |
17 |
agttatgtcccaattttcttagaaattgaagacattatagaacgaggtgtgagtcacctagactacattaagatgtggttgtcctatgtgtaaattttac |
116 |
Q |
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| T |
30807103 |
agttatgtcccaaatttcttagaaattgaagacattatagaacgaggtgtgagtcacctagactacattaaggtgtggttatcctatgtgtaaattttac |
30807004 |
T |
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| Q |
117 |
cttaatgttttggaattttatcgagtcttggttgctctaccatcatgagaggtctagacgtgctagaatggagactacatgtttgtttgaccatttattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30807003 |
cttaatgttttggaattttatcgagtcttggttgctctaccatcatgagaggtctagacgtgctagaatggagactacatgtttgtttgaccatttattg |
30806904 |
T |
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| Q |
217 |
agatcatga |
225 |
Q |
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| T |
30806903 |
agatcatga |
30806895 |
T |
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