View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18900_low_3 (Length: 379)
Name: NF18900_low_3
Description: NF18900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18900_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 362
Target Start/End: Complemental strand, 33742642 - 33742303
Alignment:
| Q |
10 |
ataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacctatgcagcattttcgcagcga |
109 |
Q |
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| T |
33742642 |
ataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacctatgcagcattttcacagcga |
33742543 |
T |
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| Q |
110 |
gaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaatatgtgcttgtgtgtgtaatacaaagcagcatctagatggaa |
209 |
Q |
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| T |
33742542 |
gaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaatatgtgcttgtgtgtgtaatacaaagcagcatctagatggaa |
33742443 |
T |
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| Q |
210 |
aaatttcaagggcctaacaaaaatatcatgtt-nnnnnnnntgtatctatttgccgtctatcaaaaagatcatgttcaaaatctgaaaatagttttgcta |
308 |
Q |
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| T |
33742442 |
aaatttcaagagcctaacaaaaatatcatgttaaaaaaaaatgtatctatttgccgtctatca--------------aaaatctgaaaatagttttgcta |
33742357 |
T |
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| Q |
309 |
aaataatgtaacagtcatttgcagctctaacagataaaacattcacttgttagt |
362 |
Q |
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| T |
33742356 |
aaataatgtaacagtcatttgcagctctaacagataaaacattcacttattagt |
33742303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 33731154 - 33730978
Alignment:
| Q |
57 |
tctcttcctcatttaaaaggtagccatcaacctatgcagcattttcgcagcgagaataatcaatgt-cttatgcatgaccatgaaatgatagtaaaatag |
155 |
Q |
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| T |
33731154 |
tctcttcctcattgaaaaggaacgcatcaacctaagcagcattttggcagcaagaataatcagtgtgtttatgcatgacaatgatctgatagtataatag |
33731055 |
T |
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| Q |
156 |
--------cgcggacacaaatatgtgcttgtgtgtgtaatacaaagcagcatctagatggaaaaatttcaagggccta |
225 |
Q |
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| T |
33731054 |
cgcagagccgcagacacaaacatgtgtttgtgtgtgtaatacaaagcaacatcaagat-gcaaattttcaagggccta |
33730978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 33619764 - 33619690
Alignment:
| Q |
265 |
tctatcaaaaagatcatgttcaaaatctgaaaatagttttg-ctaaaataatgtaacagtcatttgcagctctaa |
338 |
Q |
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| T |
33619764 |
tctaccaaaaagacgatgttcaaaatctgaaaataggttagccaaaaacaatgtaacagtcatttgcatctctaa |
33619690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 33729855 - 33729785
Alignment:
| Q |
268 |
atcaaaaagatcatgttcaaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaa |
338 |
Q |
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| T |
33729855 |
atcaaacagatcatgttcaaaaaccaaaaatagttttgactaaacaatgcaacagtcatttgcagttctaa |
33729785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 33730064 - 33729994
Alignment:
| Q |
268 |
atcaaaaagatcatgttcaaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaa |
338 |
Q |
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| T |
33730064 |
atcaaacagatcatgttcaaaaaccaaaaatagttttgactaaacaatgcaacagtcatttgcagttctaa |
33729994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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